BS28983.complete Sequence
1874 bp assembled on 2012-04-30
GenBank Submission: KX801755
> BS28983.complete
GAAGTTATCAGTCGACATGCTGGGGAAAGTGAAAGGCAGCATTATTGTCA
TTTACATGACCACTGGACTGCTGTACATACTGCTGAGCATAAAGTCATCC
GCCAGCTACATGAGGCCAAAACGCCAGATGTGGCCCGTGGATCATCCAGG
GATCGTCCTCTATAGACAGCACCCGAACGCCATGCGAAAGTTCTACTGGT
ACAACGCTAGGACCCCGATCCTGGTGGGCAAAATGCGTCTAAAAAACTAC
ATGCGCAACATGCACATGCTGCCCCGATACGTGCCCTCACCTGTCCAGTT
CCACGAGGCCTATGCGAACTCGAAGAGGAGCATCTTCAGGGACTTGAGCC
AAGTGAATGGGTTCAAGAGCACACTCCTGCCCATTGCTACTTCCACCGTT
GACTTCGTTGCGGCCCCGCTCAACACGATTGAGTACAGTTCCCCTCCGGT
AAACGCACCTATTGGTTTCAGTTCAGCCCCAGTCAACGCCTTCGTGCCCC
TCACGACGGGAACCCTTCCGAGCGCAGAACGCCTCATTGGCGCTCCGAGT
CTGTGGAACCACTCCGAAACCCACGCCTCCAACGACGGCTGGAACAAGTG
CCGCGAAAACTGCCTCCAGATTCCGTTCCAGGAGTATGCCAAGGACCAAT
ACAGCTCGCAGAGCAAGACCAGTGACCTGCCGGTGACCACGACAACCACT
TTGCCCTACTTCAACTACGTTGCGCACACCTACTTCACCCTTGACGACGT
GATTCTCCCCCATTCCGCATCGAAACTCGGCAAATCTCCAGCACAAGACC
AGCAATTTCGGCCCAGTCACCAAATTCTCACAACGGAAAGGCCCCAGGAG
CTTTTCACCGAGCGGTTTCAGCACACCACGCCGCCTCCAACTACAACAAC
CACGACCACTGAATTCACTTTTCCGGGGAAAACCACTGCTTTGGAAATGG
AGTACAGATATAGCACCCGACCAAGCTGGTTTAGCCCCACTACCTCCAGC
ACCACAACAACCGAAGCTGCGGCTTCTGAGGATCCCCCGAAATGGACAAC
TCCGCAACCCGCTCAGAACGTCTATTCCACGGCGAATGTTACGACAGGAT
CCTATAAGCACAGACTAAAATCCCTGAAAGCGACCAAAAACTTCTCTTCA
AGCATTGAAACTAAACTGAAACTTTTGAAGCTTCATCTTAAAAACCTGGT
TACAACTAGGGAAACGCCGAAGAACGTTCAGAATCTAACGACTACAGCTG
TTCTTGACAACCACACCACTTTGGAAACGACTACAACAACAACTACGCCC
ACACCGCCAAGAAGAAGAACAAACGTCAATAGAAAACTGAGAAAACTGCG
AGTTTTGGCATCGACCAAAAAGGTTCCGGTGCAGATTTCGAGAAATTCTA
CAGATTCCAGCAAAGCCATGGGAGAATTCAAAAAGAGTTTACCGAAAAGA
ATTTACCAACGGCGCAAGCACTTGAACTCCACTGCAATGCCAGAAGCCGC
GAAAAACACAACAGCTGATACCGATATCGAAACGATAAAAAAGCTTAAGC
GCCGAACAACAGCAACACCCCGGAAATCGACGAAGGTCGATGATAATGTT
ATCGTTCGAAACGCTACGCAGGCGATAAGTCACACTTTGGCAAAATCTCG
CGCCGATGGTATATCAGAAGAAAAACACGCTTTGGTCACAGAATCGGCAA
TTATGACTATTTCCAGTGGTACTTTAAAAATGAGGCAGCCCCATATTAAG
GCAAGGTCAAAGCCGCAAAGGTCCAGAAAAATGTCGCACCTGGAAAACGA
TAATTTCATACCGTCGTTGCCCATTGAGGTTTATTTTAAAAAAGTAAATC
AGCAGTAAAAGCTTTCTAGACCAT
BS28983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13563-RB | 1842 | CG13563-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13563-RB | 2123 | CG13563-RB | 166..2008 | 17..1859 | 9215 | 100 | Plus |
| ppk29-RG | 1709 | CG13568-RG | 1..72 | 1512..1441 | 360 | 100 | Minus |
| ppk29-RE | 1770 | CG13568-RE | 1..72 | 1512..1441 | 360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24055951..24057484 | 326..1859 | 7670 | 100 | Plus |
| 2R | 25286936 | 2R | 24055687..24055890 | 125..328 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 24055572..24055634 | 65..127 | 315 | 100 | Plus |
| 2R | 25286936 | 2R | 24055471..24055520 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:49:38 has no hits.
BS28983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:29 Download gff for
BS28983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 166..2005 | 17..1856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:37 Download gff for
BS28983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 166..2005 | 17..1856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:42 Download gff for
BS28983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 166..2005 | 17..1856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:42 Download gff for
BS28983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24055471..24055519 | 17..65 | 100 | -> | Plus |
| 2R | 24055573..24055634 | 66..127 | 100 | -> | Plus |
| 2R | 24055690..24055889 | 128..327 | 100 | -> | Plus |
| 2R | 24055953..24057481 | 328..1856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:37 Download gff for
BS28983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19942994..19943042 | 17..65 | 100 | -> | Plus |
| arm_2R | 19943096..19943157 | 66..127 | 100 | -> | Plus |
| arm_2R | 19943213..19943412 | 128..327 | 100 | -> | Plus |
| arm_2R | 19943476..19945004 | 328..1856 | 100 | | Plus |
BS28983.pep Sequence
Translation from 16 to 1857
> BS28983.pep
MLGKVKGSIIVIYMTTGLLYILLSIKSSASYMRPKRQMWPVDHPGIVLYR
QHPNAMRKFYWYNARTPILVGKMRLKNYMRNMHMLPRYVPSPVQFHEAYA
NSKRSIFRDLSQVNGFKSTLLPIATSTVDFVAAPLNTIEYSSPPVNAPIG
FSSAPVNAFVPLTTGTLPSAERLIGAPSLWNHSETHASNDGWNKCRENCL
QIPFQEYAKDQYSSQSKTSDLPVTTTTTLPYFNYVAHTYFTLDDVILPHS
ASKLGKSPAQDQQFRPSHQILTTERPQELFTERFQHTTPPPTTTTTTTEF
TFPGKTTALEMEYRYSTRPSWFSPTTSSTTTTEAAASEDPPKWTTPQPAQ
NVYSTANVTTGSYKHRLKSLKATKNFSSSIETKLKLLKLHLKNLVTTRET
PKNVQNLTTTAVLDNHTTLETTTTTTTPTPPRRRTNVNRKLRKLRVLAST
KKVPVQISRNSTDSSKAMGEFKKSLPKRIYQRRKHLNSTAMPEAAKNTTA
DTDIETIKKLKRRTTATPRKSTKVDDNVIVRNATQAISHTLAKSRADGIS
EEKHALVTESAIMTISSGTLKMRQPHIKARSKPQRSRKMSHLENDNFIPS
LPIEVYFKKVNQQ*
BS28983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13563-PB | 613 | CG13563-PB | 1..613 | 1..613 | 3178 | 100 | Plus |
| Mur2B-PB | 1144 | CG14796-PB | 702..1084 | 213..592 | 188 | 24.9 | Plus |
| Mur2B-PC | 1795 | CG14796-PC | 702..1084 | 213..592 | 188 | 24.9 | Plus |
| Mur2B-PA | 1795 | CG14796-PA | 702..1084 | 213..592 | 188 | 24.9 | Plus |
| Muc30E-PC | 1702 | CG33300-PC | 122..481 | 213..591 | 172 | 24.2 | Plus |
