BS28985.complete Sequence
1517 bp assembled on 2012-04-19
GenBank Submission: KX800314
> BS28985.complete
GAAGTTATCAGTCGACATGCTGACCTGGACGCTGTGGTGTGGACTGCTGT
TCCTGCTCTGGATCTACTTTCTGTGGAGCAGGCGCAGATTTTATCTGCTA
ACGCTAAAGATACCGGGACCACTTGGATATCCCATTTTGGGCATGGCTCA
CTGGCTGATGCGCAGGGAAGATATCCTCAACGCATTCGGCTGCTTTCTCG
ACAAGCACGGTCCGACAATTTTCTCCTGGCTGGGGCCCATTCCCTTTATG
ATTGTGAGTGATCCCCAAGTGGTGCAGGATATCTTCACATCTCCCCACTG
CGTCAACAAGGGCATTATTTACAAGGCAGTGGACGATGGCGCCGGAGTTG
GATTATTCAGCCTGAAGGATCCCCGCTGGAGCATCCATCGGAAGCTGCTG
AATCCCGCCTTCGGCCACAAGGTGCTACTCAGCTTCCTGCCCATTTTCAA
CCGGGAGACGGCCCTTCTGCTCGATCAACTCGAACCACTGCAGGATGACG
GCGAGAAGGATCTCATTCCACTGCTGCAGAGCTTCACCCTGGGAATTGCC
ACCCAAACCACCATGGGCAGCGATGTAAAGGATGAAGAGAGCTTCAGGAG
CAATTCCTTGCTGGGGCGATACCAATGCATCCTGGAAACCATGACAGATA
TGTGCTTCTCTCCGTGGCTCAATAGCCGATTTTGCCGGCAGCTGGCTGGA
AAGGAATCGCACTACTACCAGGCCAAAACTGAGATTCGTCAGTTTATTCG
GAAGATAATTGAGAGAAAGTTGGCCGAGGACGAAATGGGAGCACTACCTT
CCATCCAGTCCAATGATAAAAACCTATTTCTAAATCTGGTCACGGATTTG
ATGAGACGAGGAGTGTTTACCCTGAAGAATGTTGAGGATGAGTCGAATAT
CATCGTTTTTGGAGCTTTTGAGACCACGGCTAATGCAGTGTACTACACCC
TGATGTTGCTGGCGATGTTTCCGGAATACCAGGAGAGGGCCTTTGAGGAA
ATAAAGACGATATTCCCAAACACAGGAGACTTTGATGTATCCTACGCGGA
CACCCAGCAGATGGTGTACCTTGACCTGATCCTCAACGAATCCATGAGAG
TAATACCCCCTGTTCCTGTCGTATCCCGACAAACGTCTCAGGATCTGAAG
CTGTCCAATGGTATAGTGGTTCCCAAAGGGGTCCAGATCGCCATCGACAT
TTATCACATGCACAGAAGCAAAAAGATCTGGGGTCCGGATGCGGAGACCT
TCAACCCAGATCATTTCCTCCCCCACAACATCCAGGACAAGCATCCGTAC
GCCTATATACCTTTTACCAAGGGCATTCGAAATTGCATAGGTTGGAGATA
TGCCTTAATATCGGCGAAAGTTACATTAGCCAAGTTATTGCGGAATTATA
GGTTTAAAACGAGTTTTCCCTTCGAAAATCTATACTTTGTTGAAGATATT
ACGATGAAGTTGAAATCTGTGCCACTGTTGGAGCTCCAAAAGAGAACTTA
AAAGCTTTCTAGACCAT
BS28985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a4-RA | 1485 | CG6802-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a4-RA | 1651 | CG6802-RA | 70..1556 | 16..1502 | 7435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12679601..12680190 | 1342..753 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 12680889..12681088 | 368..169 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 12680650..12680836 | 554..368 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 12679374..12679538 | 1502..1338 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 12681152..12681306 | 170..16 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 12680248..12680375 | 754..627 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 12680418..12680490 | 627..555 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:35:57 has no hits.
BS28985.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 16:21:07 Download gff for
BS28985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 71..1553 | 17..1499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:06 Download gff for
BS28985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 71..1553 | 17..1499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:09 Download gff for
BS28985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 71..1553 | 17..1499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:09 Download gff for
BS28985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12680650..12680835 | 369..554 | 100 | <- | Minus |
| 3R | 12680889..12681086 | 171..368 | 100 | <- | Minus |
| 3R | 12681152..12681305 | 17..170 | 100 | | Minus |
| 3R | 12680248..12680374 | 628..754 | 100 | <- | Minus |
| 3R | 12680418..12680490 | 555..627 | 100 | <- | Minus |
| 3R | 12679377..12679535 | 1341..1499 | 100 | <- | Minus |
| 3R | 12679603..12680188 | 755..1340 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:06 Download gff for
BS28985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8505099..8505257 | 1341..1499 | 100 | <- | Minus |
| arm_3R | 8505325..8505910 | 755..1340 | 100 | <- | Minus |
| arm_3R | 8505970..8506096 | 628..754 | 100 | <- | Minus |
| arm_3R | 8506140..8506212 | 555..627 | 100 | <- | Minus |
| arm_3R | 8506372..8506557 | 369..554 | 100 | <- | Minus |
| arm_3R | 8506611..8506808 | 171..368 | 100 | <- | Minus |
| arm_3R | 8506874..8507027 | 17..170 | 100 | | Minus |
BS28985.pep Sequence
Translation from 16 to 1500
> BS28985.pep
MLTWTLWCGLLFLLWIYFLWSRRRFYLLTLKIPGPLGYPILGMAHWLMRR
EDILNAFGCFLDKHGPTIFSWLGPIPFMIVSDPQVVQDIFTSPHCVNKGI
IYKAVDDGAGVGLFSLKDPRWSIHRKLLNPAFGHKVLLSFLPIFNRETAL
LLDQLEPLQDDGEKDLIPLLQSFTLGIATQTTMGSDVKDEESFRSNSLLG
RYQCILETMTDMCFSPWLNSRFCRQLAGKESHYYQAKTEIRQFIRKIIER
KLAEDEMGALPSIQSNDKNLFLNLVTDLMRRGVFTLKNVEDESNIIVFGA
FETTANAVYYTLMLLAMFPEYQERAFEEIKTIFPNTGDFDVSYADTQQMV
YLDLILNESMRVIPPVPVVSRQTSQDLKLSNGIVVPKGVQIAIDIYHMHR
SKKIWGPDAETFNPDHFLPHNIQDKHPYAYIPFTKGIRNCIGWRYALISA
KVTLAKLLRNYRFKTSFPFENLYFVEDITMKLKSVPLLELQKRT*
BS28985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a4-PA | 494 | CG6802-PA | 1..494 | 1..494 | 2615 | 100 | Plus |
| Cyp313a3-PA | 492 | CG10093-PA | 1..492 | 1..494 | 1118 | 44.3 | Plus |
| Cyp313a1-PA | 492 | CG3360-PA | 1..491 | 1..493 | 1085 | 41.5 | Plus |
| Cyp313a2-PB | 493 | CG10094-PB | 1..492 | 1..494 | 1072 | 41.9 | Plus |
| Cyp313a5-PA | 487 | CG15807-PA | 1..486 | 1..493 | 1052 | 39.1 | Plus |
