BS28988.complete Sequence
1775 bp assembled on 2012-04-30
GenBank Submission: KX804896
> BS28988.complete
GAAGTTATCAGTCGACATGGAGCTGGCTCTGAATAAACCATCATCCTGCG
TGGACTGCTGCAAGGACTGCACTCTGCTGCCCTGCTGTTCTGCCTCCGCC
TGCTGCGACGCTAGCTGCGACGCCGCCTGCGGGTTAATACCGCCCGATCC
AGTCAGATATGAGTACCAGGAGCCCGAGGAGAACTTCATATCCATTGATG
ATGTGAAAATCAAGAGTTTCCTGTGGCAAATCGGCCAGCAGCAGAGGGAA
AAGGAGTTGGAAATCAAAAGGATCATGGAACAAGAGAAAAGGGAGAAAAG
AGAGAAGGAAAGGCGGGAGGCCGAAAAGCGAAGAGATCAAGAGGTAATCG
AATTGGACGAGGAGGAGGCTCAATCTCCTCGGGGTCTCATAATCAGCGCA
GCCAGGAGTCTAGCCCATTGGAATTCATCCATTAGGAGGGTAACACCAGA
TATCGAACTGATTCCCAGACGGGTGCACAGGGTTGTCGCAGAAATCGAAC
TGAGTGATAGTGATCACGATGAAGATAGTGAAGTAGATGAGGATGTAAGT
CTTCCATCAAACGCTGTAAGCTGCGTCCTGAATGAGCAGAGACAGGATGG
AAGCCAGAATCCACAGGAACTGGTGATCATCGTGCCCTCCGACCAGGAGG
ACGAACAGAAGACAGACAATGTCATCAAGAGGAAATCTTCTGGGTCGAGG
AGATTAGTAAAGAGGCGTCCAGGTGCCAACAGAAGGGGAAGGCATATGTA
CGAATGTCCTGACTGCGGGAAGAAAGTGCAATCTAATTACAATCTAAGAC
GTCATATGATGATCCACACAGGTGAAAGACCATTCCCTTGTGATCTGTGC
GAGCGACGTTTTCGGGAATTCAGCGATCTTAAAAAGCATCGTCGAAGGCA
CTCACACGATCCACAATTCATTTGCATGATCTGTCACTTGGGAGCACCTT
TGGAGCAGGACTCTACAAGGTGTGCGGATTGTGAAAGCAAGAATCTTATG
GTAAAACCTCAACCAGAGGAACTGGGCGAAAAAACAACGGAGGAACATTC
GGATGAGATGGAAGGGGATGATGACGAAATAGAGGAAGCGGCTCTAGAAA
ATGAGAAGCAGCCACAAGTGGCAACACAACCCAGTTTAATGGTTACTTTA
ATACCACCTATTCAATCTCCACCGGAAAAAGTTCCTTCACACACGCAGCC
AAGTCGCCCGCCACTTCCTCGCAGCTGCAGCAGTGCCAACTCCTCATCTT
CCTTGAGCAACGATGGAAATATAGCTGGAAAGTCCATGAGTCGCACTCGC
AGATCTTATCCGTGTCCTTTGTGTCATCGTCCTTTCGGAACTCGTCATAA
TCTTAAACGCCACTATATGATCCATACTGGCGAGAAACCATTTAGCTGCT
CAAAATGCAGGAAACCCTTCAGGGAGTGCTCCACGCTCAAGAAACACATG
GTCACCCATGTCAGGGATCGCTGGTACAAGTGCCTGAGGTGTCCCTCCAA
ATTCAGGGACTATCTGGAGTACTCGGATCACAAGAACAATCATCAGGATC
AGCTGAGTAGCCGCAAGTCGTCCATTTACGAGAGTGACGACGATGGCGAC
AGTTCTGTGGAAGATTGCCTAGAGTGCTGCGAGTGTCAGCAACGATTCAC
CGAGTTGGATGCTTATACGGCCCATCTTAAAAAGCACGACTTGGAGTTGT
ACGGGATGAGCATTGATGATGTGGCGGACGAGGAGCAGGATGACGTAGAT
GTGGCATAGAAGCTTTCTAGACCAT
BS28988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4496-RC | 1743 | CG4496-PC | 1..1743 | 17..1759 | 8715 | 100 | Plus |
| CG4496-RB | 1743 | CG4496-PB | 1..1743 | 17..1759 | 8715 | 100 | Plus |
| CG4496-RA | 1743 | CG4496-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4496-RC | 2623 | CG4496-RC | 532..2276 | 17..1761 | 8725 | 100 | Plus |
| CG4496-RB | 2219 | CG4496-RB | 128..1872 | 17..1761 | 8725 | 100 | Plus |
| CG4496-RA | 2238 | CG4496-RA | 128..1872 | 17..1761 | 8725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7185827..7186769 | 1761..819 | 4715 | 100 | Minus |
| 2L | 23513712 | 2L | 7186830..7187636 | 823..17 | 4035 | 100 | Minus |
| 2R | 25286936 | 2R | 7039734..7039816 | 1657..1575 | 280 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:50:53 has no hits.
BS28988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:32 Download gff for
BS28988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4496-RA | 128..1870 | 17..1759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:54 Download gff for
BS28988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4496-RA | 128..1870 | 17..1759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:10 Download gff for
BS28988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4496-RA | 128..1870 | 17..1759 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:10 Download gff for
BS28988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7185829..7186766 | 822..1759 | 100 | <- | Minus |
| 2L | 7186832..7187636 | 17..821 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:54 Download gff for
BS28988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7185829..7186766 | 822..1759 | 100 | <- | Minus |
| arm_2L | 7186832..7187636 | 17..821 | 100 | | Minus |
BS28988.pep Sequence
Translation from 16 to 1758
> BS28988.pep
MELALNKPSSCVDCCKDCTLLPCCSASACCDASCDAACGLIPPDPVRYEY
QEPEENFISIDDVKIKSFLWQIGQQQREKELEIKRIMEQEKREKREKERR
EAEKRRDQEVIELDEEEAQSPRGLIISAARSLAHWNSSIRRVTPDIELIP
RRVHRVVAEIELSDSDHDEDSEVDEDVSLPSNAVSCVLNEQRQDGSQNPQ
ELVIIVPSDQEDEQKTDNVIKRKSSGSRRLVKRRPGANRRGRHMYECPDC
GKKVQSNYNLRRHMMIHTGERPFPCDLCERRFREFSDLKKHRRRHSHDPQ
FICMICHLGAPLEQDSTRCADCESKNLMVKPQPEELGEKTTEEHSDEMEG
DDDEIEEAALENEKQPQVATQPSLMVTLIPPIQSPPEKVPSHTQPSRPPL
PRSCSSANSSSSLSNDGNIAGKSMSRTRRSYPCPLCHRPFGTRHNLKRHY
MIHTGEKPFSCSKCRKPFRECSTLKKHMVTHVRDRWYKCLRCPSKFRDYL
EYSDHKNNHQDQLSSRKSSIYESDDDGDSSVEDCLECCECQQRFTELDAY
TAHLKKHDLELYGMSIDDVADEEQDDVDVA*
BS28988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4496-PC | 580 | CG4496-PC | 1..580 | 1..580 | 3126 | 100 | Plus |
| CG4496-PB | 580 | CG4496-PB | 1..580 | 1..580 | 3126 | 100 | Plus |
| CG4496-PA | 580 | CG4496-PA | 1..580 | 1..580 | 3126 | 100 | Plus |
| CG11247-PC | 522 | CG11247-PC | 47..398 | 178..505 | 260 | 24.9 | Plus |
| CG11247-PA | 522 | CG11247-PA | 47..398 | 178..505 | 260 | 24.9 | Plus |
