BS28989.complete Sequence
1625 bp assembled on 2012-04-19
GenBank Submission: KX805394
> BS28989.complete
GAAGTTATCAGTCGACATGTCACAGCATTCGAAAAAGGAAACCACCAGCA
GCAGCGGTAGCCATGCGGCCCAGAGCAATCGTCACAACAACATCGGCGGC
GGCGGCGGAAACGGCAATAGCAACAGCATCAGCGGTAGCAGCAACAACAA
GAGCCACAAGCGGCAGGCGGCCAATGGCAGTCTAAAGTCGCCACTCCTGA
CAATCACCAACATCAACTCCCACAGCCAAAAAGGCGCTTTGAAATCGCCC
GTCAGCAAAGTCAAGCAGAGCAGCAACAGCAGCAGTAGCAACAGTAACAG
CAAAACCCTCAGCGGGAGCAGCATGCAGGAGACCGGCTCATCCGCCACAT
CCTTGCTGGCCGCTGGCGGCAAGGCGAAGAAGAACCAAAAAGACAAGCAG
CGCGAGCGGGAACGCTTGGAACGCGGCCAGCTGGTCCTCTGGCGTCGTCC
CCTGCAGACCACCAAGTACTGCGGCCTCGAGCTGTTCACCTTGCTGCGCA
CGTGGAGCACCAGATTGCTGCAACAGCGTCTCCTGTTGGCCACTCTGATA
GTATTAAGCATCGTATTTAGCGTAATTTACAAGATAGACGGTCCCCATCA
GTTGGCCATCGAGTTTGTGCGCCGGAACACCTGGTTCTTTGTCTACTGGT
TGGGTCTGGGCGTGCTCTCCTCGGTGGGCTTGGGCACCGGACTGCACACG
TTTCTGCTCTATCTGGGGCCGCACATAGCCAGTGTCACGCTGGCCGCCTA
CGAGTGCAATTCCCTGCGATTTCCACAGCCACCGTATCCCGATGATATTA
TCTGTCCCGAGGAGCCGTACGACAAACATGTGCCAAATATCTGGTCCATT
ATGTCCAAGGTGCGCCTGGAGGCTTTCCTCTGGGGAGCGGGCACAGCGCT
GGGCGAACTGCCACCGTACTTTATGGCCAAGGCGGCTAGGCTGTCCGGCT
ACGATCCGGAGGACGCCGAGGAGCTGGCCGAGTTCGAGGCCCTCAACGCG
AAGCGTCACCAAAAGAACCTCAGTATGATGGACAGGGGCAAGCTATTCAT
GGAGCGCGTTGTGGAGCGCGTCGGATTCTTTGGCATCCTGGCCTGTGCAA
GCATTCCCAATCCCCTATTCGACCTGGCGGGTATCACCTGCGGTCACTTC
CTGGTGCCATTCTGGACTTTCTTTGGCGCCACCCTGATCGGCAAGGCGGT
GATCAAGATGCACATCCAGAAGATCTTTGTGATCATCGCATTCAACGAGA
CGCTAATCGAGCGAGCCGTCGATCTGTTGGCCACGCTGCCAGTGCTTGGC
CACAAGCTGCAGGAGCCGTTCAAGTCCTTCCTGAAAAACCAAAAGCAGCG
TCTGCATCGCCAGCAGCGAGGAGCGGCCGGTGCGACAACCGGAGCTGGAG
ATTCGGGGAATTTGCTGTCGCGCATCTTCGAGACATTCGTGATCGGCATG
GTGTGCTACTTTGTGGTGTCCATCGTTAACTCCTTGGCCCAGAGCTACCA
CAAGAGGCTTCACAAAAAGCCGGCGAGCCCAGTAGCTGCGACCACGCCCA
CTCGCCAGTCGACGGGGGCGAGCAAGAAGGCGGGCAAGCAGAAAGCTTTA
CGGGACTAGAAGCTTTCTAGACCAT
BS28989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango5-RE | 1593 | CG32675-PE | 1..1593 | 17..1609 | 7935 | 99.9 | Plus |
| Tango5-RF | 1593 | CG32675-PF | 1..1593 | 17..1609 | 7935 | 99.9 | Plus |
| Tango5-RD | 1593 | CG32675-PD | 1..1593 | 17..1609 | 7935 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango5-RE | 3141 | CG32675-RE | 1111..2705 | 17..1611 | 7945 | 99.9 | Plus |
| Tango5-RF | 2298 | CG32675-RF | 268..1862 | 17..1611 | 7945 | 99.9 | Plus |
| Tango5-RD | 2207 | CG32675-RD | 177..1771 | 17..1611 | 7945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10760484..10760992 | 1611..1103 | 2545 | 100 | Minus |
| X | 23542271 | X | 10761915..10762411 | 513..17 | 2485 | 100 | Minus |
| X | 23542271 | X | 10761203..10761509 | 1102..796 | 1520 | 99.7 | Minus |
| X | 23542271 | X | 10761578..10761862 | 795..511 | 1410 | 99.6 | Minus |
| 3L | 28110227 | 3L | 11732518..11732633 | 641..756 | 310 | 84.5 | Plus |
| 3L | 28110227 | 3L | 11732961..11733075 | 1093..1207 | 260 | 81.7 | Plus |
Blast to na_te.dros performed 2014-11-28 04:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2563 | 69..313 | 280 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 115..349 | 260 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2838 | 74..322 | 244 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6950 | 115..351 | 238 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6950 | 84..307 | 238 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2687 | 22..315 | 234 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2644 | 22..330 | 233 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2441 | 41..166 | 231 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6922 | 85..294 | 230 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3003 | 97..328 | 228 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6913 | 22..166 | 214 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7006 | 39..303 | 209 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7086 | 41..302 | 164 | 57.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1144 | 85..166 | 155 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1077..1153 | 74..150 | 151 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2683 | 39..284 | 147 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1599 | 80..179 | 145 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1475..1567 | 70..165 | 121 | 61.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8634..8665 | 120..151 | 115 | 84.4 | Plus |
BS28989.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:41 Download gff for
BS28989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango5-RD | 176..1768 | 17..1609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:05 Download gff for
BS28989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango5-RC | 285..1877 | 17..1609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:04 Download gff for
BS28989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango5-RD | 177..1769 | 17..1609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:04 Download gff for
BS28989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10761578..10761859 | 514..795 | 99 | <- | Minus |
| X | 10761203..10761509 | 796..1102 | 99 | <- | Minus |
| X | 10760486..10760992 | 1103..1609 | 100 | <- | Minus |
| X | 10761915..10762411 | 17..513 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:05 Download gff for
BS28989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10655236..10655542 | 796..1102 | 99 | <- | Minus |
| arm_X | 10655611..10655892 | 514..795 | 99 | <- | Minus |
| arm_X | 10654519..10655025 | 1103..1609 | 100 | <- | Minus |
| arm_X | 10655948..10656444 | 17..513 | 100 | | Minus |
BS28989.pep Sequence
Translation from 16 to 1608
> BS28989.pep
MSQHSKKETTSSSGSHAAQSNRHNNIGGGGGNGNSNSISGSSNNKSHKRQ
AANGSLKSPLLTITNINSHSQKGALKSPVSKVKQSSNSSSSNSNSKTLSG
SSMQETGSSATSLLAAGGKAKKNQKDKQRERERLERGQLVLWRRPLQTTK
YCGLELFTLLRTWSTRLLQQRLLLATLIVLSIVFSVIYKIDGPHQLAIEF
VRRNTWFFVYWLGLGVLSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSL
RFPQPPYPDDIICPEEPYDKHVPNIWSIMSKVRLEAFLWGAGTALGELPP
YFMAKAARLSGYDPEDAEELAEFEALNAKRHQKNLSMMDRGKLFMERVVE
RVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAVIKMHI
QKIFVIIAFNETLIERAVDLLATLPVLGHKLQEPFKSFLKNQKQRLHRQQ
RGAAGATTGAGDSGNLLSRIFETFVIGMVCYFVVSIVNSLAQSYHKRLHK
KPASPVAATTPTRQSTGASKKAGKQKALRD*
BS28989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango5-PE | 530 | CG32675-PE | 1..530 | 1..530 | 2726 | 100 | Plus |
| Tango5-PF | 530 | CG32675-PF | 1..530 | 1..530 | 2726 | 100 | Plus |
| Tango5-PD | 530 | CG32675-PD | 1..530 | 1..530 | 2726 | 100 | Plus |
| Tango5-PC | 530 | CG32675-PC | 1..530 | 1..530 | 2726 | 100 | Plus |
| Tango5-PA | 530 | CG32675-PA | 1..530 | 1..530 | 2726 | 100 | Plus |
