BS28991.complete Sequence
2369 bp assembled on 2012-10-18
GenBank Submission: KX806330
> BS28991.complete
GAAGTTATCAGTCGACATGCTCATGCACACAACATCAATTTCCACAACGT
CGACGGCCACCATGACCAACTCATCGTCCTCCGCCACGCCCACACCCGGG
TCGACTTCCTCCAACAACAGTGCCACGCTCGACGCGCTGCACCAGCAACA
ACAGCAGCAGCACCAGCAGCATCAGCTGCAGCAACAACTGCAGCAGTTGC
ACACGAACGCCGCAAACAATTCACGGCCCCCCTCACGTGCCCCCTCCATT
CTGGACAGTCCGACCCTGGCGCGTGTGGAGCGGGCTCGTCTGCGACTGGA
GCAGCAGGAGCGGGAGCGGGAACGGGAGCGTAGCAGCCAGCGGGAGGTGG
GCGGCGGCAGCGGAGGAGGCGGCGGCGGTGGTAGCAGCACTGGCACTGGC
AGCACCGCCACAACCATGAATCGTGAGGATAGCCTGGAGCGCAGTATTTT
GGATCCCAAGAAAGAAACGGCGCCCTGGCATCAGATGTGGACGCACATGA
AACGCCTCTCGCACGCCTCCAAAGTCAATTCGACGAGCAGTCTGACCGCC
CAGAAAACCGATGTGGGCGTGGGCCATCATCCAAACATGACACCAAATGC
AACAGCAACAACAACGGCAACGGGAACAATGACATCAACGCCCGGAAAAT
GCATTCTATTTCCGGATAAGACGGCCTCCCTGAAAAGCTCTATGTATACG
CAACAGGTGTACTTCAGGCCCGATATGCAATCCTTGCTGGCAGGACGCAT
TCCGGTGGCCTCCATGACAGGACCCATTAAACGCGGACTGCTCTGGCAGC
AAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCGATACTTTGTGCTCACT
CGTGACTACTTGCACTGCTTCAAAAGAGCCTCGGGATCGGCCAATGAACG
TGCCTCGGATATGGGACAGTTTATCTTCAAGGTCAAGCTGGTGGACGTGG
AGAAGGTGGAGTGGCTGAATCGGCGCTCCTACAGCGCCATTGGTCTGCTA
CTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCGATGATGGCCTCGAGGA
TTGGTTCGAGCTGCTGGAGGAATGCACAATGACCTCCAAGGAGCGCAGAC
GAGCCCTGAAGATTGCCCAAGGACCCAGATCCCGAGCCTCATTGGCTGCT
CCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATTTTGGACTCGGAGGCAC
TTACTCGAGTGCCCTGGACGATTGGCTGATGACGAATGGAACCGGTGGTC
TGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAACGGTTATGGCGGGGCC
AATCCCTTCCTGTTCTCCGATTCGGTGCCGGATCTGAGTGCCCTGAACAA
CGAAAACCACAATCATCACCTGAGCGGCATCAGCACGAACCACTCGACGC
CGCAAAAGATACCGCACCACAGCAATGCGAATCTCAGTCGATACTCCAAT
GGATATGTCTCGGCCCAGAACAGTTTCACCCAAGCCGGAGCACTCTACGG
ATCGCCTAGGCGGATCTTTATCAACAGCAGCTTCGGTTCCAATCAGGTGG
TGGATGAGGAGACCGAGGAGACGGAGGTTCAGCTGAGGAGACCCAGACTG
TTCCGGGGAGTTAGCGCTACTCCGGATAATGGCAACGAACTGGACCGCGA
TTGGCTGTACCGGAAGCCAAGGGCGCCCACTGATATGAGGCACTCAGTTC
AACCAATGTTACCCACTGGCGGCGGCAGCAACATCGGGCTGGCCAAAACC
GAACTGGACTGTTCGGCCCATGATAGTGGCCTGGACACGCCCCCATCGAC
GCACCGCCCCTCGAGCTACCGGGAGGCGAGCAGGGACAGCACAGAGACCA
ATGGCAGTTCGTCGAGGGGAACACTGCTGAATAACTCATCGCCAGGCGGC
AGTTTTCGAGCCAAAAAGCTGAGCACCCAAGTAAGCAATCTCAATCAGTT
GAATTCCCTGAACGGATCGAGATACTCGGTGCAGGATCAACGCATCTTGA
AGATGCGCAACAACGAGGAGGATCGCTGTGCCTCCATCAAGATGGCCAAT
CGTCTCAATCAGAATCAGGAGCAGGCCACTTACGATCCCAACCAGAATCG
CTACTATAAGAACGGTAATGCCACGCCCCCCACATCACTGACGCCACAGC
ATACGCCGCAGCACAAACTGACGATGATGCACTATGGCAATGGGAATGGG
AACATGGGCACCCTGAATGGCAACACCAACGGATCGGATCGCATAAACGG
ATCGGCCATTTTCCGGGAGCGCTACCAACATCCCGCCCTGGCCGCCATCA
TCAACGAAGCCCAGGGCCTTAAGTTTCGAGAAGAATCAGAAAATATGTGG
TAAAAGCTTTCTAGACCAT
BS28991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RD | 2337 | CG32982-PD | 1..2337 | 17..2353 | 11685 | 100 | Plus |
| CG32982-RB | 1653 | CG32982-PB | 27..1653 | 727..2353 | 8135 | 100 | Plus |
| CG32982-RE | 2382 | CG32982-PE | 757..2382 | 728..2353 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RD | 3241 | CG32982-RD | 347..2684 | 17..2354 | 11690 | 100 | Plus |
| CG32982-RB | 2426 | CG32982-RB | 242..1869 | 727..2354 | 8140 | 100 | Plus |
| CG32982-RE | 3397 | CG32982-RE | 1214..2840 | 728..2354 | 8135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9162074..9162708 | 1696..2330 | 3175 | 100 | Plus |
| 2L | 23513712 | 2L | 9161383..9162012 | 1068..1697 | 3150 | 100 | Plus |
| 2L | 23513712 | 2L | 9127023..9127466 | 17..460 | 2220 | 100 | Plus |
| 2L | 23513712 | 2L | 9135116..9135384 | 459..727 | 1345 | 100 | Plus |
| 2L | 23513712 | 2L | 9161129..9161269 | 930..1070 | 705 | 100 | Plus |
| 2L | 23513712 | 2L | 9154658..9154765 | 727..834 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 9156497..9156596 | 834..933 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2435 | 591..650 | 138 | 70 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 425..575 | 489..641 | 129 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2418 | 591..639 | 119 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1157 | 600..642 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2370 | 590..639 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2499 | 590..639 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6782 | 590..639 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6803 | 590..639 | 115 | 70 | Plus |
BS28991.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:11 Download gff for
BS28991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RD | 333..2667 | 17..2351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:28 Download gff for
BS28991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RD | 347..2681 | 17..2351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:42 Download gff for
BS28991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RD | 347..2681 | 17..2351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:42 Download gff for
BS28991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9154659..9154765 | 728..834 | 100 | -> | Plus |
| 2L | 9156498..9156594 | 835..931 | 100 | -> | Plus |
| 2L | 9161131..9161268 | 932..1069 | 100 | -> | Plus |
| 2L | 9127023..9127466 | 17..460 | 100 | -> | Plus |
| 2L | 9135118..9135384 | 461..727 | 100 | -> | Plus |
| 2L | 9161385..9162012 | 1070..1697 | 100 | -> | Plus |
| 2L | 9162076..9162708 | 1698..2330 | 100 | -> | Plus |
| 2L | 9163141..9163161 | 2331..2351 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:28 Download gff for
BS28991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9127023..9127466 | 17..460 | 100 | -> | Plus |
| arm_2L | 9135118..9135384 | 461..727 | 100 | -> | Plus |
| arm_2L | 9154659..9154765 | 728..834 | 100 | -> | Plus |
| arm_2L | 9156498..9156594 | 835..931 | 100 | -> | Plus |
| arm_2L | 9161131..9161268 | 932..1069 | 100 | -> | Plus |
| arm_2L | 9161385..9162012 | 1070..1697 | 100 | -> | Plus |
| arm_2L | 9162076..9162708 | 1698..2330 | 100 | -> | Plus |
| arm_2L | 9163141..9163161 | 2331..2351 | 100 | | Plus |
BS28991.pep Sequence
Translation from 16 to 2352
> BS28991.pep
MLMHTTSISTTSTATMTNSSSSATPTPGSTSSNNSATLDALHQQQQQQHQ
QHQLQQQLQQLHTNAANNSRPPSRAPSILDSPTLARVERARLRLEQQERE
RERERSSQREVGGGSGGGGGGGSSTGTGSTATTMNREDSLERSILDPKKE
TAPWHQMWTHMKRLSHASKVNSTSSLTAQKTDVGVGHHPNMTPNATATTT
ATGTMTSTPGKCILFPDKTASLKSSMYTQQVYFRPDMQSLLAGRIPVASM
TGPIKRGLLWQQRDRLFSRWKERYFVLTRDYLHCFKRASGSANERASDMG
QFIFKVKLVDVEKVEWLNRRSYSAIGLLLGREGRVLLRCDDGLEDWFELL
EECTMTSKERRRALKIAQGPRSRASLAAPVSHASLQFQHFGLGGTYSSAL
DDWLMTNGTGGLARHKIGAGSLNGYGGANPFLFSDSVPDLSALNNENHNH
HLSGISTNHSTPQKIPHHSNANLSRYSNGYVSAQNSFTQAGALYGSPRRI
FINSSFGSNQVVDEETEETEVQLRRPRLFRGVSATPDNGNELDRDWLYRK
PRAPTDMRHSVQPMLPTGGGSNIGLAKTELDCSAHDSGLDTPPSTHRPSS
YREASRDSTETNGSSSRGTLLNNSSPGGSFRAKKLSTQVSNLNQLNSLNG
SRYSVQDQRILKMRNNEEDRCASIKMANRLNQNQEQATYDPNQNRYYKNG
NATPPTSLTPQHTPQHKLTMMHYGNGNGNMGTLNGNTNGSDRINGSAIFR
ERYQHPALAAIINEAQGLKFREESENMW*
BS28991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-PD | 778 | CG32982-PD | 1..778 | 1..778 | 4075 | 100 | Plus |
| CG32982-PE | 793 | CG32982-PE | 1..793 | 1..778 | 4049 | 98.1 | Plus |
| CG32982-PB | 550 | CG32982-PB | 10..550 | 238..778 | 2853 | 100 | Plus |
| CG32982-PF | 730 | CG32982-PF | 1..682 | 1..774 | 2726 | 72.7 | Plus |
| CG32982-PG | 720 | CG32982-PG | 1..667 | 1..774 | 2717 | 72.7 | Plus |
