BS28993.complete Sequence
2324 bp assembled on 2012-04-30
GenBank Submission: KX802865
> BS28993.complete
GAAGTTATCAGTCGACATGCAAAACTGCAGGCGCTGCATCAGCCTAACGG
GCCTTTTGCGGATGACACTCTACCTGCGTCCGTCCTTTTCAATTGATTTG
TCCCTGCGCCGACTGCATCGTGCGGCCTTTTTATTTTCTCGAAAAAAACC
GGAGACGAACTTGTCCACGTTGTTCAAGCCAGTACAGGTGCACGCTTATG
TGGATTCAGAGGACGTAGGTTCCGAGCTGTCGGGCAAACTGGAAAAGGCT
GAGCTGCTGAAGATTCTTAATAAGTTCACCCAACGTCGCGAAATCAAGTC
ACTATGCAACGAAAACGGACTGGACGACTACCTACAGCAACAGGCCTTTG
GCTCATTCCGAAGATTTTGCATCGAGGCAGAAAACCTTCCAGTAGATCTG
CACATAACCTTTAGCGATATAACACAGGGAGCGGGTCATATCGATGACAT
CTTCCCGTACTTCCTACGACACGCAAAGACAGTATTCCCGCACCTGGACT
GCATGGACGACCTGAAAAAGATTTCCGACCTGAGGCAGCCTGCCAACTGG
TATAGCAACGCTCGCGCCATCACCCGAAAGATTGTTTTTCATGCCGGACC
CACAAACTCCGGTAAGACTTACCATGCCATGGAGAGATACCTGAGTGCGA
AGACTGGGGTCTATTGCGGGCCACTAAAGCTTCTAGCCACTGAGGTGTAC
AACAAGGCCAATGAACGTGGCACTCCCTGCGATCTGGTCACAGGCGAGGA
GCGCAAATTCGGCATCAGCGAAAGTTTGCCAGCCAATCACGTCGCGTGCA
CTGTGGAAATGACCTCGGTGAATACTCCATATGAGGTGGCTGTAATCGAT
GAAATACAACAGATCCGCGACCCCCAGCGGGGATGGGCTTGGACGCGTGC
CTTCCTTGGACTGATCGCGGATGAAGTGCATGTTTGTGGTGAGCCAGGCG
CATTGGACCTCCTGCAAAAAATTTGCGAAACCACTGGCGAAACTGTTGAA
GTACGGCTGTACGATCGGCTTACGGAGCTGACTGTCGAAAATACCGCTTT
AGGATCATTGGACAATATAGTTCCTGGCGACTGCATTGTGTGCTTCAGCA
AACATGATATTTATACGGTTTCACGAGAAATCGAAGCACGAGGGAAGGAG
GTAGCTGTGATATATGGGGGCCTACCCCCAGGTACCAAGCTAGCCCAGGC
TGCTAAGTTTAATGATCCCGCCAATAGCTGCAAGGTAATGGTGGCGACTG
ACGCCATCGGTATGGGCTTGAACCTGAGCATTCGTCGAATCATATTTTAC
TCACTGATCAAGCCGTCGATGAATGAGCGAGGCGAGCGCGAAATCGACAC
AATATCGGTTTCGTCCGCACTTCAGATTGCGGGAAGAGCGGGCCGGTTCC
GAACTCAGTGGGAGCACGGATATGTAACTGCCTTCAAGTCCGAGGATTTG
CAAACCCTACAGCGGATATTGGCTCGGACACCTGAGCCGATAAAGCAGGC
GGGCTTGCATCCTACGGCCGATCAGATTGAGCTTTACGCCTACCACCTGC
CAAGCTCGTCTTTGAGCAACCTAATGGACATATTCGTGAATCTGTGCACT
GTCGATGATTCTCTATACTTTATGTGCAACATTGAAGACTTTAAGTTCTT
AGCCGAAATGATACAACATGTTGCTCTGCCTTTGCGGGCTCGCTATGTAT
TCTGCTGTGCACCTATTAATCGAAAGATGCCCTTTGTTTGCTCAATGTTC
CTTAAGGTAGCACGGCAATACAGCCGCAACGAGCCTATTACCTTTGATTT
TATAAAAAAAAACTGTGGCTGGCCATTCAAGCTACCCAAGACGATATTGG
ACCTGGTCCATCTTGAGGCCGTCTTTGACGTGATGGATCTGTATCTTTGG
CTAAGCTATCGGTTCATGGATCTCTTCCCTGAAGCGGCCTACGTGCGAGA
TGCCCAGAAGGAACTGGACGAAATTATACAGCAGGGCGTTTTTCAAATAA
CTCGCTTGCTTAAAAATACCGAGGCGAGTCAGGACGGAGAAACATCAAAC
TATGCAATCCGCCGAATAACGCACGTGAAGGAGCCTCGTCTACCCAGCTT
GTCGCGTGGCCGTCTCACCGAAAGGTTACTTGCACAGGGTCTTCTTACCC
CAGGCATGCTTAGCGAGCTACGCAAGGAATGGGACGCCCAGCAACTTGGC
AAATCCAATTCGCAATCTAATGAAAATTCGGAACCAGTGGTGAATAGTGA
CGACGAGGATAATTACTCAGGGATCGGGCGAAAGACAAGGAAAAAACGCA
GAAAATGAAAGCTTTCTAGACCAT
BS28993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9791-RC | 2292 | CG9791-PC | 1..2292 | 17..2308 | 11460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9791-RC | 2530 | CG9791-RC | 110..2403 | 16..2309 | 11470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4313158..4313787 | 1276..1905 | 3150 | 100 | Plus |
| 3R | 32079331 | 3R | 4312029..4312533 | 326..830 | 2525 | 100 | Plus |
| 3R | 32079331 | 3R | 4313840..4314245 | 1904..2309 | 2030 | 100 | Plus |
| 3R | 32079331 | 3R | 4311664..4311974 | 16..326 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 4312597..4312906 | 831..1140 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 4312960..4313096 | 1140..1276 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:51:16 has no hits.
BS28993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:33 Download gff for
BS28993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9791-RC | 130..2414 | 17..2301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:00 Download gff for
BS28993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9791-RC | 111..2395 | 17..2301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:18 Download gff for
BS28993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9791-RC | 111..2395 | 17..2301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:18 Download gff for
BS28993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4311665..4311974 | 17..326 | 100 | -> | Plus |
| 3R | 4312030..4312533 | 327..830 | 100 | -> | Plus |
| 3R | 4312597..4312906 | 831..1140 | 100 | -> | Plus |
| 3R | 4312961..4313095 | 1141..1275 | 100 | -> | Plus |
| 3R | 4313158..4313787 | 1276..1905 | 100 | -> | Plus |
| 3R | 4313842..4314237 | 1906..2301 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:00 Download gff for
BS28993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 137387..137696 | 17..326 | 100 | -> | Plus |
| arm_3R | 137752..138255 | 327..830 | 100 | -> | Plus |
| arm_3R | 138319..138628 | 831..1140 | 100 | -> | Plus |
| arm_3R | 138683..138817 | 1141..1275 | 100 | -> | Plus |
| arm_3R | 138880..139509 | 1276..1905 | 100 | -> | Plus |
| arm_3R | 139564..139959 | 1906..2301 | 100 | | Plus |
BS28993.pep Sequence
Translation from 16 to 2307
> BS28993.pep
MQNCRRCISLTGLLRMTLYLRPSFSIDLSLRRLHRAAFLFSRKKPETNLS
TLFKPVQVHAYVDSEDVGSELSGKLEKAELLKILNKFTQRREIKSLCNEN
GLDDYLQQQAFGSFRRFCIEAENLPVDLHITFSDITQGAGHIDDIFPYFL
RHAKTVFPHLDCMDDLKKISDLRQPANWYSNARAITRKIVFHAGPTNSGK
TYHAMERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGI
SESLPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLI
ADEVHVCGEPGALDLLQKICETTGETVEVRLYDRLTELTVENTALGSLDN
IVPGDCIVCFSKHDIYTVSREIEARGKEVAVIYGGLPPGTKLAQAAKFND
PANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSS
ALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPT
ADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ
HVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNC
GWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFMDLFPEAAYVRDAQKEL
DEIIQQGVFQITRLLKNTEASQDGETSNYAIRRITHVKEPRLPSLSRGRL
TERLLAQGLLTPGMLSELRKEWDAQQLGKSNSQSNENSEPVVNSDDEDNY
SGIGRKTRKKRRK*
BS28993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9791-PC | 763 | CG9791-PC | 1..763 | 1..763 | 3978 | 100 | Plus |
