BS28994.complete Sequence
2141 bp assembled on 2012-05-02
GenBank Submission: KX806077
> BS28994.complete
GAAGTTATCAGTCGACATGGACGTCGATCCCGCAGAAGAGGCGCCTCTAG
ACGAGGCACATACGTCCATATACGACGGCTATCCGCCCGATTTCGGCTAC
TTCAACATGGCCCACGGAATGCTGGTGGAGATCTCCGAGGAGATCCGGGC
CAAGTTTCCCCACGAGCCGCGTCTACGTTTCTCCCAGCTAAACAACCTTC
ACCTAGCGGCCCGCAGTGGTCAGATGTTGAGCTTCGTCGAGATCTTGAAT
TCGGTTAGCTGCAGGGCGGTGCAGACCCACCTGGTGAATACAAATTTCGA
TCAGCCGGATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGG
GCAATGTGAAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTG
GACCGAGAATGCAATGTCATCTACGACGGGATGGTGGTCTACGGAGCCAC
AGCCCTGTGGGTGGCTGCCGGAATGGGGCATCTGCAGATAGTCAAAATGC
TCGTCCAAGCGGGAGCGGCCATCAATCACAATACCAAGGCGCAGTCGTCG
CCGCTGAGAGCGGCCTGCTATGAGGGTCGATTGGACATCGTTGAATTCCT
AATTGACAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACA
CGCTTATGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTA
CTTCAGAATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGC
CTTGCACTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGC
TTGACCATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCC
TTGCAGGCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTCATCGA
ACGACCAGAACTGATGAGCTTGGAGGAGCAGATCACAGCATTGGAGCTTC
TGGGAGCCACTTATGCGAATGACAAAATCAAATACGACGTGAATAAGGCC
TATGGCTATCTGCTGAGAGCCATGCAGCTACGTTACAGCAATCCACGCGG
TGTGATCCGCAAAAGAGTTCAGCCCACTGTGCCCGCGTATGACAATTGGC
TTGAGACTGAAAATCTGCCCGAATTGTATGCCATCAAACTTAATCACCAC
TCCATCCACATGGAGTCGCTGGCCATAAGGGAACGCATTCTGGGCCGCAA
TAATCCGGAGTTGCCTCAGGCAATTATCTATCGAGGAGCTGTGATGGCGG
ATCAGGGCAGGTTTTACCAGTGCCAGGTGCTTTGGAACTACGCCATAGAT
CTGCGAATGCGCAATAATGTATCGGTAGATCGCGATCTCTTACGGTTCGC
CCAGCTTTTTGCTCAGATTTTGCGGGTGGAGAACCACAATCTTACGTTGG
ATCACGTTCTGCCAGTTTTGGCCAAGTGTCAGCAGGAGATCGAGAACAAT
AAGTTTAAAATTAAGGAAGCCAAGCCCAACGCTTGCCCCAGTCTATGGCA
GGATCAGAATAATCAGAACTGCATTACTGCACTCTATCTAATCAAGATCG
TTACCCATTTGGCGCGACGCAAGAAGGATCAAAACATTGACGAGGAGCAC
ATCCAGCAGCTATTCCTGGTCGTACGCAAGTTCATACAGAACGACACTCG
CCTGCAGGATGGACAGACATTGCTGCATATCGCCGTCAATGGAGTGATGC
CCGTAGACGAGTTCTACACAAATGAGATGTGCAGATTTCCCTGCTATGCC
ACTGCTTTGGTTCTGGTACACTGTGGCGCCTCCGTGGTTGCAGTGGACTC
GGATCGGAACACCCCTCTACACATCCTAGTGACCAAGGTGAACACCACTC
AGGATCGCCAGGCCGAAATGGCTCGCATTCTGGAGCTGTTCGTCGAGGCA
GGAGCCCATTTGGATGCAGTGAACGCGGCAGGGCAGACAGCGGCCACGGC
CTGCAAGCTGCCTATCTTGGCCAATCGGCTGCACGCCCATCAGAATGCCC
ACACCAGCCTCAAGTGCCTGGCCGCACGCTCAATTGCCACCAACAGGCTA
AACTTCAAGGGTCTGATACCCACGCAACTGGAGGCCTTCATACAGATGCA
CAGCGTGCGCAAGGTGCTGCCGTAGAAGCTTTCTAGACCAT
BS28994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RA | 2109 | CG9025-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
| Fem-1-RB | 1953 | CG9025-PB | 121..1953 | 293..2125 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RA | 2679 | CG9025-RA | 113..2222 | 17..2126 | 10550 | 100 | Plus |
| Fem-1-RB | 2486 | CG9025-RB | 196..2029 | 293..2126 | 9170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20663932..20664678 | 1321..575 | 3735 | 100 | Minus |
| 2R | 25286936 | 2R | 20663453..20663868 | 1734..1319 | 2080 | 100 | Minus |
| 2R | 25286936 | 2R | 20664784..20665068 | 577..293 | 1425 | 100 | Minus |
| 2R | 25286936 | 2R | 20666919..20667194 | 292..17 | 1380 | 100 | Minus |
| 2R | 25286936 | 2R | 20663160..20663389 | 1961..1732 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 20662931..20663095 | 2126..1962 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:52:11 has no hits.
BS28994.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-02 16:47:03 Download gff for
BS28994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 50..2158 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:17 Download gff for
BS28994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 113..2221 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:38 Download gff for
BS28994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 113..2221 | 17..2125 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:38 Download gff for
BS28994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20662932..20663095 | 1962..2125 | 100 | <- | Minus |
| 2R | 20663160..20663386 | 1735..1961 | 100 | <- | Minus |
| 2R | 20663453..20663868 | 1319..1734 | 100 | <- | Minus |
| 2R | 20663935..20664677 | 576..1318 | 100 | <- | Minus |
| 2R | 20664786..20665068 | 293..575 | 100 | <- | Minus |
| 2R | 20666919..20667194 | 17..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:17 Download gff for
BS28994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16550437..16550600 | 1962..2125 | 100 | <- | Minus |
| arm_2R | 16550665..16550891 | 1735..1961 | 100 | <- | Minus |
| arm_2R | 16550958..16551373 | 1319..1734 | 100 | <- | Minus |
| arm_2R | 16551440..16552182 | 576..1318 | 100 | <- | Minus |
| arm_2R | 16552291..16552573 | 293..575 | 100 | <- | Minus |
| arm_2R | 16554424..16554699 | 17..292 | 100 | | Minus |
BS28994.pep Sequence
Translation from 16 to 2124
> BS28994.pep
MDVDPAEEAPLDEAHTSIYDGYPPDFGYFNMAHGMLVEISEEIRAKFPHE
PRLRFSQLNNLHLAARSGQMLSFVEILNSVSCRAVQTHLVNTNFDQPDGQ
SLTPLTMAAMMGNVKFVKTLLSHYDVDLDRECNVIYDGMVVYGATALWVA
AGMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIVEFLIDNGA
DVNATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAA
ESGHLDVVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELM
SLEEQITALELLGATYANDKIKYDVNKAYGYLLRAMQLRYSNPRGVIRKR
VQPTVPAYDNWLETENLPELYAIKLNHHSIHMESLAIRERILGRNNPELP
QAIIYRGAVMADQGRFYQCQVLWNYAIDLRMRNNVSVDRDLLRFAQLFAQ
ILRVENHNLTLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQDQNNQ
NCITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQ
TLLHIAVNGVMPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTP
LHILVTKVNTTQDRQAEMARILELFVEAGAHLDAVNAAGQTAATACKLPI
LANRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQMHSVRKV
LP*
BS28994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-PA | 702 | CG9025-PA | 1..702 | 1..702 | 3631 | 100 | Plus |
| Fem-1-PB | 650 | CG9025-PB | 41..650 | 93..702 | 3149 | 100 | Plus |
| CG6966-PC | 664 | CG6966-PC | 43..664 | 103..695 | 701 | 32.1 | Plus |
| CG6966-PB | 664 | CG6966-PB | 43..664 | 103..695 | 701 | 32.1 | Plus |
| m-cup-PA | 702 | CG11896-PA | 105..700 | 104..695 | 383 | 23.9 | Plus |
