BS28996.complete Sequence
1439 bp assembled on 2012-04-19
GenBank Submission: KX802246
> BS28996.complete
GAAGTTATCAGTCGACATGGATGCCGAGGCGCCAAATCAACTAGAGAAAA
ATCAGACAGCGACAGTTCCGAGACAGGAAACTGCGGAGGGAGGATCGACA
GGTGAAACGGCAGTTGGAGGTGCAGCAGCCAAGGTCACGAAGGAACAGGA
TCACGATGCGGAGTATCATCCGCCTACAAGCTATCTGGAGACCATCGTGC
ACCTATTCAAGGGCAACATTGGGCCTGGTCTGTTCGCCATGGGAGATGCC
TTCAAGAACGGAGGTCTCCTGGTGGCGCCACTTCTGACTGTTGTCATAGC
AGTGGTGTCCATCCACTGCCAACATGTCCTAGTGACCTGCTCCAAGAAGA
TGCGCGATCTTAAGGGCGATAGCGTATGTGCGGACTATGCCCAGACAGTG
GAACAGTGCTTCGAGAATGGTCCATCAAAGCTGAGGGGCTGGTCCCGAAC
GATGGGGCGACTGGTGGACATATTCATTTGTGTGACCCAGTTGGGCTTCT
GTTGCATTTACTTTGTATTCATTAGCACGAATCTGAAGCAGATCCTGCAA
GCCTACGATATCGACATGAACGTTCATCTAGTGATGCTGCTGGCCTTCGT
ACCCGTTCTCCTCAGTTCACTAATCACGAACCTTAAGTGGCTGACTCCTG
TCTCTATGTTCGCCAATGTTTGCATGATCCTGGGACTGGCCATAACGTTG
TACTATGCCCTCAAGGACGGACTGCCGGAGGTTGAGGAACGCGCCCTCTG
GACGAATGGCTCCCAGCTGGCTCTCTTCTTCGGCACCGCCATCTTTGCCT
TCGAAGGCATTGCCTTAGTGATGCCGTTGAAGAACGCCATGCGAAAGCCA
CACCAGTTCGAGCGACCCTTGGGTGTGCTCAATGTGGGCATGTTCCTCGT
CTCCGTCATGTTCATGTTCGCCGGATCAGTGGGCTATATGAAGTGGGGCG
AGCAGGTCGGAGGAAGTTTGACCCTCAATCTGGGTGATACCATACTGGCC
CAGGCGGTCAAACTGATGGTGTCCGCTGGAGTACTTCTCGGTTATCCTCT
GCAGTTCTTCGTGGCCATCCAGATTATGTGGCCAAATGCAAAACAAATGT
GCGGCATCGAAGGACGATCACTGCTTGGAGAGCTCGGTTTCCGGACATTC
ATGGTCCTGGTGACTCTTGCCATCGCGGAAATGGTTCCGGCCCTGGGACT
CTTCATTTCGCTGATAGGCGCACTATGCTCAACGGCGTTGGCCCTGGTGT
TTCCGCCAGTCATTGAGTTGATCTCAAGGAGCGAGCTGAACAAAGGACCA
GGCATCTGGATTTGCGTGAAAAACTTAGTCATTCTAGTGTTGGCTTTACT
TGGCTTCTTCACTGGCTCCTACGAAAGCCTAAAGCAAATTGTCAAGCATT
TCGGGGAGGAAGAGGTGCACTGAAAGCTTTCTAGACCAT
BS28996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16700-RA | 1407 | CG16700-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16700-RA | 2433 | CG16700-RA | 265..1673 | 15..1423 | 7045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17096715..17097168 | 540..993 | 2270 | 100 | Plus |
| X | 23542271 | X | 17096281..17096645 | 177..541 | 1825 | 100 | Plus |
| X | 23542271 | X | 17097472..17097728 | 1167..1423 | 1285 | 100 | Plus |
| X | 23542271 | X | 17097237..17097409 | 994..1166 | 865 | 100 | Plus |
| X | 23542271 | X | 17095411..17095568 | 27..184 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:17:07 has no hits.
BS28996.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:12 Download gff for
BS28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 267..1672 | 17..1422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:58 Download gff for
BS28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 267..1672 | 17..1422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:26 Download gff for
BS28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 267..1672 | 17..1422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:26 Download gff for
BS28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17095411..17095564 | 27..180 | 100 | -> | Plus |
| X | 17096285..17096645 | 181..541 | 100 | -> | Plus |
| X | 17096717..17097168 | 542..993 | 100 | -> | Plus |
| X | 17097237..17097409 | 994..1166 | 100 | -> | Plus |
| X | 17097472..17097727 | 1167..1422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:58 Download gff for
BS28996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16991505..16991760 | 1167..1422 | 100 | | Plus |
| arm_X | 16989444..16989597 | 27..180 | 100 | -> | Plus |
| arm_X | 16990318..16990678 | 181..541 | 100 | -> | Plus |
| arm_X | 16990750..16991201 | 542..993 | 100 | -> | Plus |
| arm_X | 16991270..16991442 | 994..1166 | 100 | -> | Plus |
BS28996.pep Sequence
Translation from 16 to 1422
> BS28996.pep
MDAEAPNQLEKNQTATVPRQETAEGGSTGETAVGGAAAKVTKEQDHDAEY
HPPTSYLETIVHLFKGNIGPGLFAMGDAFKNGGLLVAPLLTVVIAVVSIH
CQHVLVTCSKKMRDLKGDSVCADYAQTVEQCFENGPSKLRGWSRTMGRLV
DIFICVTQLGFCCIYFVFISTNLKQILQAYDIDMNVHLVMLLAFVPVLLS
SLITNLKWLTPVSMFANVCMILGLAITLYYALKDGLPEVEERALWTNGSQ
LALFFGTAIFAFEGIALVMPLKNAMRKPHQFERPLGVLNVGMFLVSVMFM
FAGSVGYMKWGEQVGGSLTLNLGDTILAQAVKLMVSAGVLLGYPLQFFVA
IQIMWPNAKQMCGIEGRSLLGELGFRTFMVLVTLAIAEMVPALGLFISLI
GALCSTALALVFPPVIELISRSELNKGPGIWICVKNLVILVLALLGFFTG
SYESLKQIVKHFGEEEVH*
BS28996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16700-PA | 468 | CG16700-PA | 1..468 | 1..468 | 2405 | 100 | Plus |
| CG4991-PE | 459 | CG4991-PE | 47..458 | 54..462 | 1063 | 49.5 | Plus |
| CG4991-PF | 459 | CG4991-PF | 47..458 | 54..462 | 1063 | 49.5 | Plus |
| CG4991-PA | 459 | CG4991-PA | 47..458 | 54..462 | 1063 | 49.5 | Plus |
| CG4991-PB | 459 | CG4991-PB | 47..458 | 54..462 | 1063 | 49.5 | Plus |
