BS29008.complete Sequence
845 bp assembled on 2012-04-19
GenBank Submission: KX802926
> BS29008.complete
GAAGTTATCAGTCGACATGCAGATGCGCGTCACGGAATTGCCAGCAGTTC
AGCTGCTGCTGCCCCTAATCCTGATTGGATTGGCCAGCGGACAGCGCGTC
GCTCCCGGAGTGAATCCGCAGCACTATCAACAAGTGCCGCAGCAGGTGCC
GCAGCACCACCCACCGCCACCACCGCAGCACCACCAGCCGCAGTACCAGC
AACAGGTCCACTCAGCACCCGGTGTGCCGCCCCAGCAATACCAATACGAA
CAGGTTCAAGTTCCCGTGCAACAGCAGGCACCGGTCCAATATCAGCAAGT
TCCTGTGCAGCAGCAGCAGCAGCAACATCAACCAATCCACCAGCAACCGA
CGATGCAGCAACAGCAACAGCCGCAGCAGGGGCACCACCAGCAGGCAGGT
GGCCACCACCATGGGCAACCGCAGCAAGTCCTAAACACCGGCAACATTCA
GCAGGAGCGCGCTCACATCCAGGAGCACATGCAAGTGCCAATCGATACGA
GCAAGATGTCCGAGGCTGAGCTGCAGTTCCACTACTTCAAGATGCACGAC
TCGGACAACAACAACAAGTTGGACGGCTGCGAGCTGATCAAATCGCTGAT
CCATTGGCACGTCAAGGATAGTGGAGAAAAACCAGCCGAGGCACACCAGG
AAGGCCACGCCGAGGGCCAAGCGCAGCAGCCCGATGATCACAAATCCGGA
TCTGTGTACACGGACAAGGCTCTGGAGGACACCATTGACTATGTGCTGAA
GTCCATGGACCTGAACAACGATGGATTTGTCGACTGGGCCGAGTACCGCA
AGACTGAGGCCAACATTGGCAAGGACTAGAAGCTTTCTAGACCAT
BS29008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17271-RB | 813 | CG17271-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
| CG17271-RA | 846 | CG17271-PA | 1..595 | 17..611 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17271-RB | 1098 | CG17271-RB | 137..951 | 16..830 | 4075 | 100 | Plus |
| CG17271-RA | 1550 | CG17271-RA | 137..732 | 16..611 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20821146..20821366 | 462..242 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 20819276..20819495 | 830..611 | 1100 | 100 | Minus |
| 3R | 32079331 | 3R | 20820650..20820798 | 611..463 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 20821428..20821541 | 241..128 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 20821601..20821712 | 127..16 | 560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3371 | 254..346 | 139 | 63.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..728 | 454..356 | 111 | 61 | Minus |
| BS | 5142 | BS BS 5142bp | 2047..2118 | 226..297 | 108 | 61.1 | Plus |
BS29008.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:04:59 Download gff for
BS29008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RB | 152..964 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:31 Download gff for
BS29008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RB | 138..950 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:40 Download gff for
BS29008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RB | 138..950 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:40 Download gff for
BS29008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20821146..20821366 | 242..462 | 100 | <- | Minus |
| 3R | 20821428..20821541 | 128..241 | 100 | <- | Minus |
| 3R | 20821601..20821711 | 17..127 | 100 | | Minus |
| 3R | 20819277..20819494 | 612..829 | 100 | <- | Minus |
| 3R | 20820650..20820798 | 463..611 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:31 Download gff for
BS29008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16644999..16645216 | 612..829 | 100 | <- | Minus |
| arm_3R | 16646372..16646520 | 463..611 | 100 | <- | Minus |
| arm_3R | 16646868..16647088 | 242..462 | 100 | <- | Minus |
| arm_3R | 16647150..16647263 | 128..241 | 100 | <- | Minus |
| arm_3R | 16647323..16647433 | 17..127 | 100 | | Minus |
BS29008.pep Sequence
Translation from 16 to 828
> BS29008.pep
MQMRVTELPAVQLLLPLILIGLASGQRVAPGVNPQHYQQVPQQVPQHHPP
PPPQHHQPQYQQQVHSAPGVPPQQYQYEQVQVPVQQQAPVQYQQVPVQQQ
QQQHQPIHQQPTMQQQQQPQQGHHQQAGGHHHGQPQQVLNTGNIQQERAH
IQEHMQVPIDTSKMSEAELQFHYFKMHDSDNNNKLDGCELIKSLIHWHVK
DSGEKPAEAHQEGHAEGQAQQPDDHKSGSVYTDKALEDTIDYVLKSMDLN
NDGFVDWAEYRKTEANIGKD*
BS29008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17271-PB | 270 | CG17271-PB | 1..270 | 1..270 | 1472 | 100 | Plus |
| CG17271-PA | 281 | CG17271-PA | 1..251 | 1..264 | 1146 | 81.4 | Plus |
| NUCB1-PA | 569 | CG32190-PA | 439..565 | 35..155 | 185 | 41.8 | Plus |
| CG12964-PB | 1129 | CG12964-PB | 330..473 | 36..159 | 168 | 37.5 | Plus |
| CG12964-PC | 1129 | CG12964-PC | 330..473 | 36..159 | 168 | 37.5 | Plus |
| NUCB1-PA | 569 | CG32190-PA | 383..544 | 26..158 | 154 | 37.4 | Plus |
