BS29029.complete Sequence
896 bp assembled on 2012-05-15
GenBank Submission: KX804136
> BS29029.complete
GAAGTTATCAGTCGACATGTGTTGTTGGCAATCTCTTTGCTCCATAGCTT
GGTTCGCCGCGATGTCGGCAGCCCAGGAGACGCTTTCCGACACCCCGCAG
AATAGCACACCTTTGTTAGCCACAACTGTGTCGACCACGAAGGTGATAAG
TTTCCGCCCTCGTTATCCATACATCGTCTCCATAGGAGAGAACCTTAAAG
GATACTACAAGCACCTTTGCGTGGGCGTTATACTTTCGAATGAGTTCGTG
CTCAGTGCAGCCCACTGCATCCAAACGAATCCAACCAAACAACTGTACGT
GGCTGGTGGCGCCGATTCGCTGAACAGCCGGAAGCAGACCCGCTTCTTCG
TCGTGGAAAGAAGATGGCATCCCCAGTTTAGGGTGCTCGGCGGCAACGAC
ATTGCCGTGTTGAGGATTTACCCCAAATTCCCGCTCGACGATGTGCGATT
TCGTAGCATTAACTTTGCTGGAAAGCCTCAAAGGGATAGTGGCACCCAGG
CCTCGCTGGTTGGCTGGGGTCGGGTTGGCGTCGGCAAGATAAGAAAACTC
CAGGAGATGCCCTTCTTGACCATGGAGAACGATGAGTGCCAGCAAAGCCA
TCGCTTCGTTTTCCTCAAACCGCTTGACATCTGTGCGATGCATTTGAAAG
GACCGCGAGGTCCCTGCGACGGAGATTCTGGAGCTCCCTTGATGAATGTG
GCAAAAGAGAAGCTGTACGGATTACTTTCCTACGGTCGAAAAGCCTGCAC
CCCATTAAAACCCTATGCCTTCACTCGCATCAACGCATACTCCAGCTGGA
TTCAGGAATCCATGGACTCTATGGCTGCGAGATTAAAAGTCTTACAAATT
AATCGCACTGTATGGAAAGATGGGTTATAGAAGCTTTCTAGACCAT
BS29029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10041-RA | 819 | CG10041-PA | 1..819 | 62..880 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10041-RA | 952 | CG10041-RA | 17..887 | 17..887 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12351409..12352063 | 671..17 | 3275 | 100 | Minus |
| 3R | 32079331 | 3R | 12350880..12351096 | 887..671 | 1055 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:21:23 has no hits.
BS29029.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 14:08:19 Download gff for
BS29029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 17..880 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:40 Download gff for
BS29029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 17..880 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:13 Download gff for
BS29029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 17..880 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:13 Download gff for
BS29029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12350887..12351096 | 671..880 | 100 | <- | Minus |
| 3R | 12351410..12352063 | 17..670 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:40 Download gff for
BS29029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8176609..8176818 | 671..880 | 100 | <- | Minus |
| arm_3R | 8177132..8177785 | 17..670 | 100 | | Minus |
BS29029.pep Sequence
Translation from 16 to 879
> BS29029.pep
MCCWQSLCSIAWFAAMSAAQETLSDTPQNSTPLLATTVSTTKVISFRPRY
PYIVSIGENLKGYYKHLCVGVILSNEFVLSAAHCIQTNPTKQLYVAGGAD
SLNSRKQTRFFVVERRWHPQFRVLGGNDIAVLRIYPKFPLDDVRFRSINF
AGKPQRDSGTQASLVGWGRVGVGKIRKLQEMPFLTMENDECQQSHRFVFL
KPLDICAMHLKGPRGPCDGDSGAPLMNVAKEKLYGLLSYGRKACTPLKPY
AFTRINAYSSWIQESMDSMAARLKVLQINRTVWKDGL*
BS29029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10041-PA | 272 | CG10041-PA | 1..272 | 16..287 | 1434 | 100 | Plus |
| CG12256-PA | 283 | CG12256-PA | 60..282 | 51..266 | 289 | 32.3 | Plus |
| CG17404-PB | 275 | CG17404-PB | 48..269 | 51..262 | 258 | 33 | Plus |
| CG3916-PA | 267 | CG3916-PA | 23..267 | 35..272 | 254 | 29 | Plus |
| CG16749-PA | 265 | CG16749-PA | 5..265 | 5..270 | 230 | 27.5 | Plus |
