Clone BS29035 Report

Search the DGRC for BS29035

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:290
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptix-RA
Protein status:BS29035.pep: gold
Sequenced Size:599

Clone Sequence Records

BS29035.complete Sequence

599 bp assembled on 2012-04-19

GenBank Submission: KX802817

> BS29035.complete
GAAGTTATCAGTCGACATGAATCCCAACATGAACATGATGCCCATGTCTG
GGCCACAAATGATGCAGGTAATGCAATCCTCGCCATCGGGACCCCCAGGA
CCAGTGCAGCATCAACAGCAGCAGCCTCCACAGCCACTGCAGCAGCAGCA
GCAGGCCGAAAAATTGGACAACATTTCCAGGGTGAAGAGTTTGCTGGGAC
CACTGCGGGAGTCCATGTTCCTCACCATCCGGTCGAGCGCCTTCGCGCTG
CAGCAAAACAATCTCGCGGACAACTTAAAGAGGGACACGGGTGCCCACCA
TGTTCCGCGGTTCGACAAGCACTTGGAAGACTTTTACGCCTGTTGCGACC
AGATCGAGATCCACTTGAAGACGGCGATGCAGTGCCTCCAGCAGCAGAAC
TCCTCCAATCACTATCTCCCCGGTCCGGTGACTCCCATGCGCATGGAGAC
CTTTATGCCGGACAACGCCGGCCCCATTTCGTATCCCACTTACTTGAACA
CGGTCCGCGTTCACATACAGTCCGCCAAGGATATACACGACACTCTGATT
AGTGCCGCGCAGAACATTTCGCAGGCTGATTGAAAGCTTTCTAGACCAT

BS29035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
ix-RA 567 CG13201-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
ix-RA 727 CG13201-RA 79..645 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11359519..11360085 583..17 2835 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:15:14 has no hits.

BS29035.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:02 Download gff for BS29035.complete
Subject Subject Range Query Range Percent Splice Strand
ix-RA 79..644 17..582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:36 Download gff for BS29035.complete
Subject Subject Range Query Range Percent Splice Strand
ix-RA 79..644 17..582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:49 Download gff for BS29035.complete
Subject Subject Range Query Range Percent Splice Strand
ix-RA 79..644 17..582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:49 Download gff for BS29035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11359520..11360085 17..582 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:36 Download gff for BS29035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7247025..7247590 17..582 100   Minus

BS29035.pep Sequence

Translation from 16 to 582

> BS29035.pep
MNPNMNMMPMSGPQMMQVMQSSPSGPPGPVQHQQQQPPQPLQQQQQAEKL
DNISRVKSLLGPLRESMFLTIRSSAFALQQNNLADNLKRDTGAHHVPRFD
KHLEDFYACCDQIEIHLKTAMQCLQQQNSSNHYLPGPVTPMRMETFMPDN
AGPISYPTYLNTVRVHIQSAKDIHDTLISAAQNISQAD*

BS29035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
ix-PA 188 CG13201-PA 1..188 1..188 996 100 Plus