BS29040.complete Sequence
827 bp assembled on 2012-04-19
GenBank Submission: KX800588
> BS29040.complete
GAAGTTATCAGTCGACATGAGCTCCATTAAGATCGAATTTGCAGTGCAGA
TGCGAAGAGGTGACGAATCCTATGCCGGTGCCCTCCGTTCGGCGCTGGAT
GGGGTCGGCCAGGTGGAAATTGACACCCAGGAAGGTCGAGTGATAATCCA
AACCCAACGACCTTGGTCAGAGATTCAGGACAAGATAGAAGCCACAGGTG
TCCGGGCCGTACTCTCCGGATTCGGCGGACAGTCGGCGGTGGCCCTTATT
AACACAACAGGAAGTGTAGTGGACAAGACACCAATCCAGGGAGTGGTTCG
GTTTACCACCATTACCGCAGACAAGAAGCCTGGAGTGGTTGTGGATGGCG
TTGTGGACGGTCTATCGCCTGGACTGCACGGATTACATATTCACGAGAGT
GGTGACACTTCCGCAGGTTGCTCGTCGGTCGGAGAACACTACAATCCCCG
CCAGTCGCCACATGGAAGCCCTGCAGCTGGGGCAGAGGAGCGGCACGCCG
GAGATCTTGGCAACATCCGAGCGGATGAAAACGGCAGGGCCACCTTTAGA
TTTGTGGATCCAGTGCTAGAGGTCTGGGACATAATCGGAAGGGCTGTCGT
CCTAACAGCCAATGCCGATGACCTGGGACGCGGGGGCAATGATCAGAGCC
TGATTGACGGCAACTCTGGGGAAAGGATTGCGTGTGGTATAATTGCTCGT
TCGGCGGGCATCTTGGAAAACTTTAAGAGAATCTGTGCATGTGATGGGGT
CACACTTTGGGATGAACGCAATAAGCCACTGGCTGGCAAGGAGCGCTCAC
AAAAGCTGTAAAAGCTTTCTAGACCAT
BS29040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccs-RB | 795 | CG17753-PB | 1..795 | 17..811 | 3945 | 99.7 | Plus |
| Ccs-RC | 777 | CG17753-PC | 14..777 | 48..811 | 3790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccs-RB | 890 | CG17753-RB | 51..846 | 17..812 | 3950 | 99.7 | Plus |
| Ccs-RC | 959 | CG17753-RC | 64..828 | 48..812 | 3795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10121814..10122460 | 676..30 | 3205 | 99.7 | Minus |
| 2R | 25286936 | 2R | 10121617..10121755 | 812..674 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:16:16 has no hits.
BS29040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:07 Download gff for
BS29040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCS-RB | 39..831 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:46 Download gff for
BS29040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccs-RB | 51..843 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:10 Download gff for
BS29040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccs-RB | 51..843 | 17..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:10 Download gff for
BS29040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10121620..10121753 | 676..809 | 100 | <- | Minus |
| 2R | 10121815..10122458 | 32..675 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:46 Download gff for
BS29040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6009125..6009258 | 676..809 | 100 | <- | Minus |
| arm_2R | 6009320..6009963 | 32..675 | 99 | <- | Minus |
BS29040.pep Sequence
Translation from 16 to 810
> BS29040.pep
MSSIKIEFAVQMRRGDESYAGALRSALDGVGQVEIDTQEGRVIIQTQRPW
SEIQDKIEATGVRAVLSGFGGQSAVALINTTGSVVDKTPIQGVVRFTTIT
ADKKPGVVVDGVVDGLSPGLHGLHIHESGDTSAGCSSVGEHYNPRQSPHG
SPAAGAEERHAGDLGNIRADENGRATFRFVDPVLEVWDIIGRAVVLTANA
DDLGRGGNDQSLIDGNSGERIACGIIARSAGILENFKRICACDGVTLWDE
RNKPLAGKERSQKL*
BS29040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccs-PB | 264 | CG17753-PB | 1..264 | 1..264 | 1360 | 100 | Plus |
| Ccs-PC | 258 | CG17753-PC | 3..258 | 9..264 | 1315 | 98.8 | Plus |
| Sod-PD | 167 | CG11793-PD | 5..162 | 74..226 | 284 | 42.5 | Plus |
| Sod-PA | 153 | CG11793-PA | 9..148 | 90..226 | 281 | 44.4 | Plus |
| Sod3-PA | 181 | CG9027-PA | 39..178 | 86..226 | 275 | 43.8 | Plus |
