BS29043.complete Sequence
1022 bp assembled on 2012-04-19
GenBank Submission: KX805026
> BS29043.complete
GAAGTTATCAGTCGACATGAGATCCCTAAGTCTGTTGCTACTCAGCGCCA
GCTGCGCGCTAATCATAAGCTTAGCCTACGCCCATCCCCCCGAGGGAGTG
TGGAAGAAGAAGCTCACCTGGAAGGAGGATTGGGTCCAGGTGTGGAAGAC
CGTTAAGAAGGAGGCGTGGGAAACCAAGTGGAAGAAGGTTTCGGTCCCAA
TATGGAAGGAAGTCAAGGTTCCCGTCTGGAAGGAGGAGAAGGTTCCCGAC
TGGAAGATCGTAAAGAAGCCGAAAATTGAGGAGAGAGAGGTGCCTGCCTG
GAAGGAGGTTAAGGTGGCCGAATGGAAGAAGATAACGAAACCCATTTGGG
TGCCCACAAAGGTCGCCGTCTGGAAGGAAATCCAGGTGCCCATTTGGAAG
GAAGTGCAGGTCCCGTACTGGAAGGAAATACAAGTGCCCATTTGGAAGGA
AGTACAGGTCGCAGACTGGAAGCAAATGTTTGAGCCCCAATGGGTGAAAA
TGGGCATTCCCGGCGAAAAGTTCTTGGGTAAGGACCACGAGGGCTGGGAG
TACACCAGCCACGATCTCTGGCGCAAGAAGCTGATCTGGAAGCCCGTGTG
GAAGAAGGTCTGGCGCACCGAGAAGAAGCAGGAGTGGAAGACCGAGAAGA
AGCAGGAGTGGCGCACCGAGAAGAAGCAGGAATGGAAGACGGAGAAGGTG
CAGGAGTGGAAGCAGGACAAGAAGCTGGAGTGGAAGGACGAGTGGATCCA
GGTGTGGAAGCCCGTGAAGAAACAAATCTGGATTAAGGAGAAGCGCGAGA
CCTGGATCGAGGAGAAGGTTCAGATCTGGCGCACCGAGAAGCGCCAGGTG
TGGGCCACCGAGAAGCGGCAGGCGTGGAAGGACGAGTGGCAGTCGGTCAA
CGTGCCCGTCTGGAAGGAGGTCAAGGTGCAGGAGTGGAAGAAGGTGTGGA
AGCCCGTCTGGGAGAAGGTGTGGGTGCCAGTGAGCCATGGCCACGGATGG
GACTAGAAGCTTTCTAGACCAT
BS29043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12164-RB | 990 | CG12164-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
| CG12164-RA | 990 | CG12164-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
| CG12164-RB | 990 | CG12164-PB | 601..696 | 641..736 | 225 | 82.3 | Plus |
| CG12164-RB | 990 | CG12164-PB | 625..720 | 617..712 | 225 | 82.3 | Plus |
| CG12164-RA | 990 | CG12164-PA | 601..696 | 641..736 | 225 | 82.3 | Plus |
| CG12164-RA | 990 | CG12164-PA | 625..720 | 617..712 | 225 | 82.3 | Plus |
| CG12164-RB | 990 | CG12164-PB | 571..697 | 635..761 | 215 | 78 | Plus |
| CG12164-RB | 990 | CG12164-PB | 619..745 | 587..713 | 215 | 78 | Plus |
| CG12164-RA | 990 | CG12164-PA | 571..697 | 635..761 | 215 | 78 | Plus |
| CG12164-RA | 990 | CG12164-PA | 619..745 | 587..713 | 215 | 78 | Plus |
| CG15615-RB | 1092 | CG15615-PB | 496..606 | 503..613 | 210 | 79.3 | Plus |
| CG12164-RB | 990 | CG12164-PB | 354..413 | 418..477 | 195 | 88.3 | Plus |
| CG12164-RB | 990 | CG12164-PB | 402..461 | 370..429 | 195 | 88.3 | Plus |
| CG12164-RA | 990 | CG12164-PA | 354..413 | 418..477 | 195 | 88.3 | Plus |
| CG12164-RA | 990 | CG12164-PA | 402..461 | 370..429 | 195 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12164-RB | 1554 | CG12164-RB | 88..1078 | 16..1006 | 4955 | 100 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 88..1078 | 16..1006 | 4955 | 100 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 689..784 | 641..736 | 225 | 82.3 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 713..808 | 617..712 | 225 | 82.3 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 689..784 | 641..736 | 225 | 82.3 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 713..808 | 617..712 | 225 | 82.3 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 659..785 | 635..761 | 215 | 78 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 707..833 | 587..713 | 215 | 78 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 659..785 | 635..761 | 215 | 78 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 707..833 | 587..713 | 215 | 78 | Plus |
| CG15615-RB | 1429 | CG15615-RB | 644..754 | 503..613 | 210 | 79.3 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 442..501 | 418..477 | 195 | 88.3 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 490..549 | 370..429 | 195 | 88.3 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 442..501 | 418..477 | 195 | 88.3 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 490..549 | 370..429 | 195 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7312506..7313019 | 493..1006 | 2570 | 100 | Plus |
| 2R | 25286936 | 2R | 7312174..7312453 | 216..495 | 1400 | 100 | Plus |
| 2R | 25286936 | 2R | 7311931..7312113 | 37..219 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 7312630..7312725 | 641..736 | 225 | 82.3 | Plus |
| 2R | 25286936 | 2R | 7312654..7312749 | 617..712 | 225 | 82.3 | Plus |
| 2R | 25286936 | 2R | 7312600..7312726 | 635..761 | 215 | 78 | Plus |
| 2R | 25286936 | 2R | 7312648..7312774 | 587..713 | 215 | 78 | Plus |
| 2R | 25286936 | 2R | 7312328..7312387 | 418..477 | 195 | 88.3 | Plus |
| 2R | 25286936 | 2R | 7312376..7312435 | 370..429 | 195 | 88.3 | Plus |
| 2R | 25286936 | 2R | 16793966..16794028 | 565..503 | 195 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:16:27 has no hits.
BS29043.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:07 Download gff for
BS29043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12164-RA | 76..1065 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:49 Download gff for
BS29043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12164-RA | 89..1078 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:14 Download gff for
BS29043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12164-RA | 89..1078 | 17..1006 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:14 Download gff for
BS29043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7311932..7312111 | 38..217 | 100 | -> | Plus |
| 2R | 7312176..7312451 | 218..493 | 100 | -> | Plus |
| 2R | 7311483..7311503 | 17..37 | 100 | -> | Plus |
| 2R | 7312507..7313019 | 494..1006 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:49 Download gff for
BS29043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3199681..3199956 | 218..493 | 100 | -> | Plus |
| arm_2R | 3198988..3199008 | 17..37 | 100 | -> | Plus |
| arm_2R | 3199437..3199616 | 38..217 | 100 | -> | Plus |
| arm_2R | 3200012..3200524 | 494..1006 | 100 | | Plus |
BS29043.pep Sequence
Translation from 16 to 1005
> BS29043.pep
MRSLSLLLLSASCALIISLAYAHPPEGVWKKKLTWKEDWVQVWKTVKKEA
WETKWKKVSVPIWKEVKVPVWKEEKVPDWKIVKKPKIEEREVPAWKEVKV
AEWKKITKPIWVPTKVAVWKEIQVPIWKEVQVPYWKEIQVPIWKEVQVAD
WKQMFEPQWVKMGIPGEKFLGKDHEGWEYTSHDLWRKKLIWKPVWKKVWR
TEKKQEWKTEKKQEWRTEKKQEWKTEKVQEWKQDKKLEWKDEWIQVWKPV
KKQIWIKEKRETWIEEKVQIWRTEKRQVWATEKRQAWKDEWQSVNVPVWK
EVKVQEWKKVWKPVWEKVWVPVSHGHGWD*
BS29043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12164-PB | 329 | CG12164-PB | 1..329 | 1..329 | 1888 | 100 | Plus |
| CG12164-PA | 329 | CG12164-PA | 1..329 | 1..329 | 1888 | 100 | Plus |
| CG15615-PB | 363 | CG15615-PB | 74..272 | 21..271 | 606 | 44.2 | Plus |
| CG15615-PB | 363 | CG15615-PB | 75..279 | 88..326 | 385 | 33.5 | Plus |
