BS29045.complete Sequence
1640 bp assembled on 2012-04-19
GenBank Submission: KX803807
> BS29045.complete
GAAGTTATCAGTCGACATGCTTTTGGCCAAGTGCGTCCTTTTCTTGGTCC
TGCAGGTATTATCCTGCCACGGCGAGTTCTTCAGTTCCACCTCGGGCCTG
GCAAAGCTGTTCGAAACGGAGGTCGTCCTCCTGGCAGAGCTGCAAAATTA
TGTGAATGAAATTAACCAGCACGCTGAGGCGCTACAGAGTGAGATCGATG
CCATCCGCGTGGAGCACCTGAATGCCGCCGATGGAATCGATGACTACCTC
AACAATCCGGTGAACGCGTTCCGGCTGATAAAACGCCTTCACAGCGATTG
GGAAACCTTCGAGGGCAGTGTTACGGCGGATTCGAGTCGCTCAAACTATC
TAGATACCATGGCGAGTCTTAAGGAGAATCTGAGCTTTCCTTCTCAGGAC
GATTTTGTGGGATCGGCGATAGCTCTTACGCGACTTCAGCAGACTTATCA
ATTGGATGTGGCTGAGCTGGCCAGTGGAATCCTGAATGGCGTTAAATATG
GTACGGCCATGTCGTGGCAGGATTGTTTTGTCCTTGGCCAGCACCTGTAT
GCCCTGCGAGATTACAACCACACGGTGCCATGGCTGCAGCAGTCGATGCA
GTTGCTCGGAGAACAGTCCTACGGGTCGGAGTCCGCATCCCTAGACTTTA
TGGAGGCAGTGGTGGAATATCATCGCGAGATGGGTGCCCACGAAAGTGCC
CTGAGTCTGGTGAACCATGTGCTTTCCATAGAACCGGACCAAAGGAGTCA
CCTTCTGGAGGCTCGTCAGCAACTGGAGGAGCTAATCACGGATGGGGACA
AGAACGGGTTGCTTCACTTGACAGCACGAAGACCTGGAGACTACCATGAG
TCCCGGGAGTTTCGTATGTACGAGCAGGTGTGTCGAGGCGAGTTGGCACC
ACTTCCATCCAAGCAAAGAAATCTTAGGTGTCGCTTAAGGAAGAGTCGCT
TGGGCTACGCACCATTTAAGTTGGAGGAGCTCCACCTGGACCCACTGGTG
GTGCAATTGCATCAGGTTATTGGCTCCAAAGACTCGGACTCCCTTCAGAA
AACAGCTAGGCCTAGGATAAAAAGATCCACTGTGTACTCTTTGGGTGGAA
ATGGAGGTTCCACGGCAGCCGCCTTCCGCACCAGTCAAGGTGCCTCCTTC
AATTACTCTAGGAACGCAGCAACGAAACTTCTTAGCCGACATGTAGGTGA
CTTCTCAGGTTTGAATATGGATTATGCAGAGGATCTGCAGGTGGCAAACT
ATGGGATCGGTGGACACTATGAGCCGCATTGGGACAGCTTTCCCGAAAAC
CACATTTACCAAGAAGGAGATCTACATGGCAACCGAATGGCAACGGGCAT
TTACTACCTAGCTGATGTAGAGGCCGGTGGAGGAACCGCCTTTCCCTTTT
TGCCACTGCTGGTGACTCCAGAAAGAGGAAGCCTTCTCTTTTGGTACAAT
CTGCATCCCTCTGGAGACCAGGATTTTCGAACGAAACACGCCGCTTGTCC
TGTTCTTCAGGGCAGCAAATGGATTGCCAATGTATGGATTCGTGAACGCA
ATCAGGATAATGTAAGGCCCTGTGATCTCGAAAGGGGACAGGAAATCTCA
CTGCATTACAGGGACTTCGACTAGAAGCTTTCTAGACCAT
BS29045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaMP-RA | 1608 | CG9726-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaMP-RA | 1882 | CG9726-RA | 66..1675 | 17..1626 | 8050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30492404..30493260 | 1357..501 | 4285 | 100 | Minus |
| 3R | 32079331 | 3R | 30495916..30496088 | 189..17 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 30492183..30492348 | 1523..1358 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30493624..30493780 | 501..345 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30493852..30494008 | 344..188 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30492020..30492122 | 1626..1524 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:14:06 has no hits.
BS29045.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:06:25 Download gff for
BS29045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 63..1670 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:26 Download gff for
BS29045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 66..1673 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:29 Download gff for
BS29045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 66..1673 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:29 Download gff for
BS29045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30492183..30492348 | 1358..1523 | 100 | <- | Minus |
| 3R | 30492022..30492122 | 1524..1624 | 100 | <- | Minus |
| 3R | 30492404..30493259 | 502..1357 | 100 | <- | Minus |
| 3R | 30493624..30493780 | 345..501 | 100 | <- | Minus |
| 3R | 30493852..30494006 | 190..344 | 100 | <- | Minus |
| 3R | 30495916..30496088 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:26 Download gff for
BS29045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26317744..26317844 | 1524..1624 | 100 | <- | Minus |
| arm_3R | 26317905..26318070 | 1358..1523 | 100 | <- | Minus |
| arm_3R | 26318126..26318981 | 502..1357 | 100 | <- | Minus |
| arm_3R | 26319346..26319502 | 345..501 | 100 | <- | Minus |
| arm_3R | 26319574..26319728 | 190..344 | 100 | <- | Minus |
| arm_3R | 26321638..26321810 | 17..189 | 100 | | Minus |
BS29045.pep Sequence
Translation from 16 to 1623
> BS29045.pep
MLLAKCVLFLVLQVLSCHGEFFSSTSGLAKLFETEVVLLAELQNYVNEIN
QHAEALQSEIDAIRVEHLNAADGIDDYLNNPVNAFRLIKRLHSDWETFEG
SVTADSSRSNYLDTMASLKENLSFPSQDDFVGSAIALTRLQQTYQLDVAE
LASGILNGVKYGTAMSWQDCFVLGQHLYALRDYNHTVPWLQQSMQLLGEQ
SYGSESASLDFMEAVVEYHREMGAHESALSLVNHVLSIEPDQRSHLLEAR
QQLEELITDGDKNGLLHLTARRPGDYHESREFRMYEQVCRGELAPLPSKQ
RNLRCRLRKSRLGYAPFKLEELHLDPLVVQLHQVIGSKDSDSLQKTARPR
IKRSTVYSLGGNGGSTAAAFRTSQGASFNYSRNAATKLLSRHVGDFSGLN
MDYAEDLQVANYGIGGHYEPHWDSFPENHIYQEGDLHGNRMATGIYYLAD
VEAGGGTAFPFLPLLVTPERGSLLFWYNLHPSGDQDFRTKHAACPVLQGS
KWIANVWIRERNQDNVRPCDLERGQEISLHYRDFD*
BS29045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaMP-PA | 535 | CG9726-PA | 1..535 | 1..535 | 2807 | 100 | Plus |
| PH4alphaNE1-PA | 537 | CG9728-PA | 4..533 | 1..531 | 1093 | 44.1 | Plus |
| PH4alphaEFB-PA | 550 | CG31022-PA | 7..542 | 8..522 | 924 | 38.6 | Plus |
| PH4alphaSG1-PA | 540 | CG31014-PA | 6..539 | 7..533 | 821 | 35.6 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 12..520 | 1..519 | 730 | 33.7 | Plus |
