BS29049.complete Sequence
1058 bp assembled on 2012-04-19
GenBank Submission: KX804891
> BS29049.complete
GAAGTTATCAGTCGACATGCCATCGAAAAAGAAAAAATACAACGCACGCT
TTCCGGCGGGTCGCATCAAGAAGATCATGCAAAGCGACGAGGAAATCGGG
AAGGTGGCCCAGGCGGTGCCTGTTATCATCTCACGCACGCTGGAGCTCTT
CGTGGAGTCGCTGCTGACCAAGACGCTGCGCATCACGAATGCGCGCAACG
CCAAGACGCTATCGCCATCGCACATGAGGCAGTGTATCGTATCCGAGAAA
CGCTTTGACTTCCTCAAGGAGCTGGTCCGCAACATACCCGACATCAGTGT
GGCCGAGGAGGCCGCCTACAACGAGGACGATGTGTTACGCAGCTCGCCAG
AGGAACAGTATCCAGATTCAGACACGCCATATGATCTTAGCCTGCCATCG
ACGTCAATGCGCTCGCAGGCGAACGGCACAGCTGCCTACATGCGCTCCAT
GAGTCTGAACAACGGAGCCGGATCGGGCGGAGGAGCCGCAGCCACCAAGC
GGCAGTTTCAGTCGCAGCACTCCACCCAGGAAACTCCCACCACCAGCACC
ACCCTGCCCGCCAAGCTGGCCCGCTCCGGGTCCATGCCGGCCTACACGCC
ACGGGGCAGACCGCCCAATCACCTCAAGAAACAGTCGGTGCAGCTCGATA
CTGCCATACCCGCCCCGATCTGCAACTACGAACTCAACAAGCCCATTGTC
AAGATCGACTACAGCCACGTGCAAATGCCGACGGCGAACCTGTGCACACC
GGACGCCTCTGATTCTGGGTCAGGATCGGGCGCCGGATCTGGAGCTTTTA
ACTTCGACATAGCTGCTCCGGTGATCAATATCGATCTGACGAATATCGTG
GCCGGTGGAGCACCTGGCAGTGGTGTGCCCCCCGCCTCTATTGGATTACC
AGCGGCCACGCCGGGGGACAACAATAATGTGAACCAAATGGCTGGAAAGA
GCAGCGCTCCCATCATTCCAAAGGCCACAGCGGCATCAGCGACCCCCACT
GAAACCGTTTTCGAATTAGACGAAGACTATGACAATATTTGAAAGCTTTC
TAGACCAT
BS29049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-RA | 1026 | CG10318-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-RA | 1235 | CG10318-RA | 96..1121 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21670495..21671479 | 58..1042 | 4925 | 100 | Plus |
| 2R | 25286936 | 2R | 21670247..21670289 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:16:35 has no hits.
BS29049.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:08 Download gff for
BS29049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 80..1104 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:50 Download gff for
BS29049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 96..1120 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:15 Download gff for
BS29049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2alpha-RA | 96..1120 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:15 Download gff for
BS29049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21670247..21670288 | 17..58 | 100 | -> | Plus |
| 2R | 21670496..21671478 | 59..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:50 Download gff for
BS29049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17557752..17557793 | 17..58 | 100 | -> | Plus |
| arm_2R | 17558001..17558983 | 59..1041 | 100 | | Plus |
BS29049.pep Sequence
Translation from 16 to 1041
> BS29049.pep
MPSKKKKYNARFPAGRIKKIMQSDEEIGKVAQAVPVIISRTLELFVESLL
TKTLRITNARNAKTLSPSHMRQCIVSEKRFDFLKELVRNIPDISVAEEAA
YNEDDVLRSSPEEQYPDSDTPYDLSLPSTSMRSQANGTAAYMRSMSLNNG
AGSGGGAAATKRQFQSQHSTQETPTTSTTLPAKLARSGSMPAYTPRGRPP
NHLKKQSVQLDTAIPAPICNYELNKPIVKIDYSHVQMPTANLCTPDASDS
GSGSGAGSGAFNFDIAAPVINIDLTNIVAGGAPGSGVPPASIGLPAATPG
DNNNVNQMAGKSSAPIIPKATAASATPTETVFELDEDYDNI*
BS29049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2alpha-PA | 341 | CG10318-PA | 1..341 | 1..341 | 1742 | 100 | Plus |
