BS29057.complete Sequence
1700 bp assembled on 2012-04-30
GenBank Submission: KX802007
> BS29057.complete
GAAGTTATCAGTCGACATGTCTGAGCTGCGTCGCAGTTTAAGTCGACTCT
CGATGATCGTCTACAGAGCCACCCATTCCAGCGAACAGTCGTGGCGGGAG
GAGCTTCTCAGGTACCGGCAGACACGTTTCAGTTCGCGGCGTGTTCGAAA
ACGTGTGGTCTTCAAGCACGGCGAGTGCAACGTTGTGCAGGGAAATGTGG
CCAAGAGACGGCGTCGCTATCTGCAGGACATCTTCACCACCCTGGTTGAC
GCCCAGTGGCGCTGGACGCTGCTCGTCTTCGCCGCCAGCTTCGTGTTCTC
GTGGGCCTTCTTTGGATTCATCTGGTGGATCATCGCCTACGCACACAATG
ATCTGGAGTACACCAATCTCAAGAACCAGTCACCCGATCTGGTGGCCAAC
ATAACGCACACGGTCTGCGTAACACAGGTCTCCAATATGATGTCCGCCTT
CCTGTACTCCGTGGAAACCCAGACGACGATAGGCTATGGTAATCGCTATG
TGACGGAGGAGTGCCCGGAGGCGATATTCACGATGTGCATCCAGTGCATC
ACGGGTGTCTTCATCCAGGCGTTCATGGTGGGCATTGTGTTTGCCAAGTT
GTCGCGTCCCAAGAAACGTGCCCAGACGCTGCTCTTCTCGCGCAATGCTG
TTATCTGCCACCGGGATGGAGTTCCATGCCTGATGTTCCGTGTGGGAGAC
ATGCGCAAGTCGCACATCATCGAGGCCCATGTGCGGGCCCAGATCATCCG
CAAGAAGGTGACAAAGGAGGGCGAGGTGCTGCCCTTCTACCAGCAGGAGT
TGCACATCGGAGCCGATGGTGGAGAGGATCGGCTAATGTTCATCTGGCCC
ACTACCATAGTGCACAAAATTGATAGGAACAGTCCACTGTACATGCTCTC
CGCCTCCGATATGCTAAAGGAACGCTTCGAAGTGGTGGTTATGCTGGAGG
GCGTCATCGAGTCCACTGGCATGACCACACAGGCCAGAAGCAGCTACTTG
CCCTCGGAGGTGCTGTGGGGCCATCGTTTCGTGAATGTGGTGTCCTTCCG
CAAGGAGACCGGCGAATACGAGGTGGACTACACGCTATTCAACAACACCT
ACGACGTGGACACTCCGCTGTGCAGCGCCAAGCAGCTGGACGAGCTTAAG
TCGGAGTACTCGAAGAGCGCCAAGTGTGTGAATGCACCCTTTGCGGATCG
CACGCTCTCGGCCAGCTTGTTCCAGCGTATTGCCTCCGCCGCCTCGGTGG
ATCATCTGGATCCGGCTAGCGACGAATCGCTGGACTCTGGCCGCCTGCAG
ATACGCTCCCATTCCATACCCAACGGCGTGCTGGCCAGCGAGCTGGAGCC
GCTGAATAACAACAAGCATGGCGCTTCGTTCACCATGGGTGGCCTGACCA
TCACGACGACGGCGCCCAGCATCCCCAACCTATCCAGTATTAACGAGAAG
ACCAACTCCGGAAATTCCATAAACAGCAGCAATTACAGCAATAACAATAG
CCTGAGCACGCTGACCGGAGGAGGAAGTGCTGCCAGCGGACCCGGAGGAG
GCATCACCATTGTGGCCGGTTCCGGGAACCATGGCGGCGCTGGTGGAGGA
GGAGGAGGCGGCGGTAGACACAAGTCGAATCCCCGCCGTCTTAGCATCAA
GCAGGATCAGCTGCCCATCGATTCCATTTGTTGAAAGCTTTCTAGACCAT
BS29057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk1-RB | 1668 | CG44159-PB | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| Irk1-RD | 1599 | CG44159-PD | 23..1599 | 108..1684 | 7885 | 100 | Plus |
| Irk1-RG | 1959 | CG44159-PG | 385..1959 | 110..1684 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk1-RB | 2813 | CG44159-RB | 463..2130 | 17..1684 | 8340 | 100 | Plus |
| Irk1-RD | 2202 | CG44159-RD | 23..1599 | 108..1684 | 7885 | 100 | Plus |
| Irk1-RG | 2910 | CG44159-RG | 653..2227 | 110..1684 | 7875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23184222..23184959 | 947..1684 | 3690 | 100 | Plus |
| 3R | 32079331 | 3R | 23183441..23184164 | 224..947 | 3620 | 100 | Plus |
| 3R | 32079331 | 3R | 23182942..23183061 | 108..227 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23179079..23179176 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5832..5900 | 692..760 | 120 | 63.8 | Plus |
BS29057.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:26 Download gff for
BS29057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir-RB | 463..2129 | 17..1683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:15 Download gff for
BS29057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk1-RB | 463..2129 | 17..1683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:47 Download gff for
BS29057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk1-RB | 463..2129 | 17..1683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:47 Download gff for
BS29057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23179079..23179173 | 17..111 | 100 | -> | Plus |
| 3R | 23182946..23183060 | 112..226 | 100 | -> | Plus |
| 3R | 23183444..23184164 | 227..947 | 100 | -> | Plus |
| 3R | 23184223..23184958 | 948..1683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:15 Download gff for
BS29057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19004801..19004895 | 17..111 | 100 | -> | Plus |
| arm_3R | 19008668..19008782 | 112..226 | 100 | -> | Plus |
| arm_3R | 19009166..19009886 | 227..947 | 100 | -> | Plus |
| arm_3R | 19009945..19010680 | 948..1683 | 100 | | Plus |
BS29057.pep Sequence
Translation from 16 to 1683
> BS29057.pep
MSELRRSLSRLSMIVYRATHSSEQSWREELLRYRQTRFSSRRVRKRVVFK
HGECNVVQGNVAKRRRRYLQDIFTTLVDAQWRWTLLVFAASFVFSWAFFG
FIWWIIAYAHNDLEYTNLKNQSPDLVANITHTVCVTQVSNMMSAFLYSVE
TQTTIGYGNRYVTEECPEAIFTMCIQCITGVFIQAFMVGIVFAKLSRPKK
RAQTLLFSRNAVICHRDGVPCLMFRVGDMRKSHIIEAHVRAQIIRKKVTK
EGEVLPFYQQELHIGADGGEDRLMFIWPTTIVHKIDRNSPLYMLSASDML
KERFEVVVMLEGVIESTGMTTQARSSYLPSEVLWGHRFVNVVSFRKETGE
YEVDYTLFNNTYDVDTPLCSAKQLDELKSEYSKSAKCVNAPFADRTLSAS
LFQRIASAASVDHLDPASDESLDSGRLQIRSHSIPNGVLASELEPLNNNK
HGASFTMGGLTITTTAPSIPNLSSINEKTNSGNSINSSNYSNNNSLSTLT
GGGSAASGPGGGITIVAGSGNHGGAGGGGGGGGRHKSNPRRLSIKQDQLP
IDSIC*
BS29057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk1-PB | 555 | CG44159-PB | 1..555 | 1..555 | 2882 | 100 | Plus |
| Irk1-PG | 652 | CG44159-PG | 127..652 | 30..555 | 2734 | 99.8 | Plus |
| Irk1-PF | 652 | CG44159-PF | 127..652 | 30..555 | 2734 | 99.8 | Plus |
| Irk1-PD | 532 | CG44159-PD | 9..532 | 32..555 | 2731 | 100 | Plus |
| Irk1-PE | 540 | CG44159-PE | 6..540 | 25..555 | 2730 | 98.1 | Plus |
