BS29066.complete Sequence
1646 bp assembled on 2012-04-19
GenBank Submission: KX802140
> BS29066.complete
GAAGTTATCAGTCGACATGCGTGGACTAGTGTTACTGGTGGGACTGATCT
TCTTACTGGCTCAGGGATCCCTTGCCTCGGATTACTTTTCATCCATTACG
GGCCTGGAGGATCTCTTGCATACGGAGCAGTATCTTACAAGGGAACTGAG
GTCAAAGGTTAATGCAATCCAAACTGCACTACAACAGCTCGAGAGCGAGC
TATCCTCCATCGAAAAGGAGCACACCATGGCCGCGTCGGACACGGAGAAC
TACCTGACCAACCCGGTGAATGTGTACCGCCTGATGAAGCGCCTTCACAC
GGACTGGTCTCTGATGGAGGGACGAGTGCAGCTTATGGCTGAGGAGATGA
ATTTCAATGCTACCAGGGAGTACGGCCTGAGCTACCCCAGCCAGGAGGAC
GTGGAGGGGGCTGCTCTGGCTCTCGTCCGCCTGCAGAGCACCTACAAACT
GGACGTGGCCCAGGTGGCCCAGGGCATTCTGAATGGCGTCAAATACGGCT
CCGATATGAGCTGGCAGGATTGCTTCGAGCTGGGTCAACAACTCTTTGAA
ATGGAGGACTACAACAACACCAAGGTCTGGCTGCGGGAATCGATGGAACG
CTTGCGACGTCAGACCAGCCACGCCCCCAGCCACCTAGCGCCCACTAGCG
GACCGGATACGGTTACCCTCAACAAAATGGAGGCGACGGCCAAGAGTTTG
TTCCAATTGGGCGATTTCGACACTGCTTTCGAGCTGAGCCAGCGAGTCCT
TCAGTTCGATCCCAAACGCATAAGGAACTGGCATCTCGGTGACAAGGGAA
CGGCGCCTCCGGAGGACATCGATGATGTGTATCTACCAAAGCACTCGGAC
TCTTACAGCCTATCGCAGGAGTTCGCCAAATACGAAAAGGTGTGCCGAGG
AGAGGTGCATCCAATTGTCCGCCAGGAGTTGCGGTGTCGCTATAGCCGGG
GAAACCATCCGTATCGCTTTCTGGCGCCACTGAAGCTGGAGGAGCACAGC
CTGGATCCCTATGTGGCAACCTTCCATGATATACTGAGTCCCGGAAAGAT
CTCGCAGCTCCGGGAAATGGCTGTTCCGCGCATGCATCGCTCCACAGTGA
ATCCCCTGCCCGGCGGACAGCTCAAAAAGTCCGCTTTTCGGGTGAGCAAA
AATGCGTGGCTGGCGTACGAGTCCCATCCCACAATGGTGGGCATGCTCCG
TGACCTGAAGGACGCCACCGGGCTGGATACCACCTTCTGCGAGCAGCTCC
AAGTGGCCAACTACGGTGTGGGTGGGCACTACGAGCCGCACTGGGATTTC
TTCCGGGACCCCAATCATTATCCGGCGGAGGAGGGCAACCGCATTGCCAC
TGCCATATTTTATCTATCCGAGGTGGAGCAGGGTGGGGCCACCGCCTTTC
CCTTCCTGGACATCGCCGTGAAGCCGCAGCTGGGCAACGTTCTCTTCTGG
TACAACCTACACCGCTCCCTGGACAAGGACTACCGCACCAAGCACGCCGG
TTGTCCAGTGCTCAAGGGCAGCAAGTGGATTGGCAACGTTTGGATACACG
AGGTGACCCAGACCTTCGCCCGACCCTGCGACGTTTTCCGGGATCACGAG
GTGTCGCTGGAGTACGAGATAATCAAATAAAAGCTTTCTAGACCAT
BS29066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE1-RA | 1614 | CG9728-PA | 1..1614 | 17..1630 | 8055 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE1-RA | 1737 | CG9728-RA | 105..1719 | 17..1631 | 8060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30497313..30497816 | 1363..860 | 2520 | 100 | Minus |
| 3R | 32079331 | 3R | 30498094..30498307 | 711..498 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 30500044..30500222 | 195..17 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 30497084..30497249 | 1529..1364 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30499036..30499192 | 350..194 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30498830..30498977 | 498..351 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30497873..30498022 | 859..710 | 735 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30496769..30496870 | 1631..1530 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:16:40 has no hits.
BS29066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:09 Download gff for
BS29066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 1..1612 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:53 Download gff for
BS29066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 105..1716 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:16 Download gff for
BS29066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 105..1716 | 17..1628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:16 Download gff for
BS29066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30496772..30496870 | 1530..1628 | 100 | <- | Minus |
| 3R | 30497084..30497249 | 1364..1529 | 100 | <- | Minus |
| 3R | 30497313..30497816 | 860..1363 | 100 | <- | Minus |
| 3R | 30497873..30498021 | 711..859 | 99 | <- | Minus |
| 3R | 30498095..30498306 | 499..710 | 100 | <- | Minus |
| 3R | 30498830..30498977 | 351..498 | 100 | <- | Minus |
| 3R | 30499036..30499190 | 196..350 | 100 | <- | Minus |
| 3R | 30500044..30500222 | 17..195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:53 Download gff for
BS29066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26324552..26324699 | 351..498 | 100 | <- | Minus |
| arm_3R | 26324758..26324912 | 196..350 | 100 | <- | Minus |
| arm_3R | 26325766..26325944 | 17..195 | 100 | | Minus |
| arm_3R | 26322494..26322592 | 1530..1628 | 100 | <- | Minus |
| arm_3R | 26322806..26322971 | 1364..1529 | 100 | <- | Minus |
| arm_3R | 26323035..26323538 | 860..1363 | 100 | <- | Minus |
| arm_3R | 26323595..26323743 | 711..859 | 99 | <- | Minus |
| arm_3R | 26323817..26324028 | 499..710 | 100 | <- | Minus |
BS29066.pep Sequence
Translation from 16 to 1629
> BS29066.pep
MRGLVLLVGLIFLLAQGSLASDYFSSITGLEDLLHTEQYLTRELRSKVNA
IQTALQQLESELSSIEKEHTMAASDTENYLTNPVNVYRLMKRLHTDWSLM
EGRVQLMAEEMNFNATREYGLSYPSQEDVEGAALALVRLQSTYKLDVAQV
AQGILNGVKYGSDMSWQDCFELGQQLFEMEDYNNTKVWLRESMERLRRQT
SHAPSHLAPTSGPDTVTLNKMEATAKSLFQLGDFDTAFELSQRVLQFDPK
RIRNWHLGDKGTAPPEDIDDVYLPKHSDSYSLSQEFAKYEKVCRGEVHPI
VRQELRCRYSRGNHPYRFLAPLKLEEHSLDPYVATFHDILSPGKISQLRE
MAVPRMHRSTVNPLPGGQLKKSAFRVSKNAWLAYESHPTMVGMLRDLKDA
TGLDTTFCEQLQVANYGVGGHYEPHWDFFRDPNHYPAEEGNRIATAIFYL
SEVEQGGATAFPFLDIAVKPQLGNVLFWYNLHRSLDKDYRTKHAGCPVLK
GSKWIGNVWIHEVTQTFARPCDVFRDHEVSLEYEIIK*
BS29066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE1-PA | 537 | CG9728-PA | 1..537 | 1..537 | 2839 | 100 | Plus |
| PH4alphaMP-PA | 535 | CG9726-PA | 1..531 | 4..533 | 1093 | 44.1 | Plus |
| PH4alphaEFB-PA | 550 | CG31022-PA | 7..545 | 4..527 | 947 | 38.5 | Plus |
| PH4alphaSG1-PA | 540 | CG31014-PA | 7..530 | 10..526 | 802 | 35.4 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 10..520 | 1..521 | 763 | 33.7 | Plus |
