BS29070.complete Sequence
2075 bp assembled on 2012-04-30
GenBank Submission: KX805973
> BS29070.complete
GAAGTTATCAGTCGACATGCTAACCCTACTAATTCGGCTGGCGGCGACGG
CCATACCTGTTTGTGCTATTCTCTTTGTGGCCGGCACGTTTCTGTTCAAG
GTTTATATTAGCATACGATCCCGCTACGACGCCCGTGTCAACTGCTGGTT
CTGCAATGGCAATGTACGAGTTCCGTACCAGGATCGCAACAGTTGGACCT
GCCCGTCATGCGAGCAATACAATGGATTCACCAAGGACGGCGACTACAAC
CGGGATATTACGTCGCAGCGGGACTGCAGCCTTGGCTCTCAGAAGAACAG
CTCCAAAGGCAGCTCCAGCATCTGTGCCAACTCATATTATTCCGATGTCC
TGACTGCTCAACCTCCTGCTCCCAAAAACGGCCTGTGCGACCAGTGCAAC
GAGGCGCAGCGCCTGAAGGTCGAGAAGCTCTCTCAATTCGAGCCCAAGAA
CGAGTCCCGATTCGATCAGGAACTAAAGGTTTACAGAGAACGACTGGAGA
AGCAGTTTCGCCTGTGTAGCAGCTGCGAACGACATGTGAATAAAGTCCTG
CACGAGAAGAAGAAAATGGTGTTGAGCTCCAAGTTCTTGAACTATATCAT
CAAGGGAGCATCGTTGCTCAAGCAGCCGCACTTCAACCGATTGGCCGCTG
CCCAAAAGCAGTTTAAACTGCAGCGATACCGCATTCTGATGACCATCCTG
ACTGTAGTCAATATTTTGTGCCTGCTCTGCCGGCTGCCGAATGCAACTTC
CATTCAGTTTACGACTTACCTTGGAAAATTCATTGGGCTAACCTTGTTCT
ACGCCTACTCCCACGTGCTGGCCTTAATTCGAGTGGTGACTTCGAGCGTA
GGCATTTTCCTGGAACAGCGCGAAATGATAGCCAAACTTTTATTGTATGG
CCGTACCTTTGGCAAGCTCTTGCTGTATTCGCTTGGCATAGGCCAACAGC
AAGTGCAGCAAGCAACCTTCGCATCCTGTTTTATTGGGATCTACCCATAT
GCCATGCTGGCCCTGTGTTTCCTGCACACGATATACGACGGATTGAAATT
TACGCGATTCACCATTGCTCTATTGTTATGGAGTGGGTATGCCATGGGTA
TCGAATTCCTGGATCCTTACATCAGTGGAATATCCTTTATACTGGTGGGA
AGTTTTGTAACCCTTGTTTTGTTGGCCACCAACCGGACCAATCTGTTGAG
CCAAGTGAATCGGGACGAGTCTGCCTGTGAGAGCTTCCATCGCCTCTGTG
CGGACGAATGCGATGATGAAACGCTGAGCATGCTCAGTCAGCAGTTAAGT
GGATACAGTGATATCAGCAATAGCAATTTGTCCATGCGAACCGCCTCTGT
GTGCCACTCACCCGCCCCAACGATTTCCCAGCGAACAATTCAGGCGCCTG
CTTCTTTGCTGTCCCTGGACTCGTTGCATCTGTCGAAGCAACGGATGGAA
CAGCAGGCTTGGTCCTCGAACTATGGAGATGCCTCTACAGTGGTTGCCCC
GCGTGTCCAGCCGGCGATGATGTTTCAACAGAAACCCATGAGACCATTAG
AGTCCCAATGGTATCGCCATGGACAAAGTAACCTGGCCCAAGGCAATACT
TTCACTAGATCCACGCAAAATCTTTTGATGCCATCGCGTTTGCCGTCCAT
AAACAGGAACGTCGGCGGAGCTGATGTAAGCGCCTGGGTGGCGGCCAATC
AAAGTGTGAACCAAGATCTATGCACTGCCAATCTAATGAGACATTACGAA
GAGAAACAGCAGAATCAACTTTCCCGCACTTCGTCACAATCTTCTGGATT
TGAGTCGCAGCCACGTCCAGAAGCCCAATGCGGAACAGGTGCTGCAACTG
TAAGGGACTACGGCTGGTCCGAAGCCCGTGAGAGTCAGCGAAATTTCGCA
GTTTTTCCGCCAATGCCGTCACCTACACCCACAATAACGCCTAGTGAATA
TCAATACTCGAGGACTGCTCTTCCGCAGCAACAGCCAACTATGCAGCCGG
GGGATTTACTTAGGAAGTGGATTGAGATTAACTCAAAATCCTCACAGCCA
ATACACTAAAAGCTTTCTAGACCAT
BS29070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7744-RA | 2043 | CG7744-PA | 1..2043 | 17..2059 | 10185 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7744-RA | 2585 | CG7744-RA | 186..2228 | 17..2059 | 10185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19454253..19455170 | 1142..2059 | 4590 | 100 | Plus |
| 2R | 25286936 | 2R | 19453545..19454201 | 485..1141 | 3285 | 100 | Plus |
| 2R | 25286936 | 2R | 19452845..19453214 | 117..486 | 1820 | 99.5 | Plus |
| 2R | 25286936 | 2R | 19452689..19452789 | 17..117 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:51:21 has no hits.
BS29070.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:33 Download gff for
BS29070.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7744-RA | 181..2221 | 17..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:02 Download gff for
BS29070.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7744-RA | 186..2226 | 17..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:19 Download gff for
BS29070.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7744-RA | 186..2226 | 17..2057 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:19 Download gff for
BS29070.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19452689..19452789 | 17..117 | 100 | -> | Plus |
| 2R | 19452846..19453214 | 118..486 | 99 | -> | Plus |
| 2R | 19453547..19454201 | 487..1141 | 100 | -> | Plus |
| 2R | 19454253..19455168 | 1142..2057 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:02 Download gff for
BS29070.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15340351..15340719 | 118..486 | 99 | -> | Plus |
| arm_2R | 15340194..15340294 | 17..117 | 100 | -> | Plus |
| arm_2R | 15341052..15341706 | 487..1141 | 100 | -> | Plus |
| arm_2R | 15341758..15342673 | 1142..2057 | 100 | | Plus |
BS29070.pep Sequence
Translation from 16 to 2058
> BS29070.pep
MLTLLIRLAATAIPVCAILFVAGTFLFKVYISIRSRYDARVNCWFCNGNV
RVPYQDRNSWTCPSCEQYNGFTKDGDYNRDITSQRDCSLGSQKNSSKGSS
SICANSYYSDVLTAQPPAPKNGLCDQCNEAQRLKVEKLSQFEPKNESRFD
QELKVYRERLEKQFRLCSSCERHVNKVLHEKKKMVLSSKFLNYIIKGASL
LKQPHFNRLAAAQKQFKLQRYRILMTILTVVNILCLLCRLPNATSIQFTT
YLGKFIGLTLFYAYSHVLALIRVVTSSVGIFLEQREMIAKLLLYGRTFGK
LLLYSLGIGQQQVQQATFASCFIGIYPYAMLALCFLHTIYDGLKFTRFTI
ALLLWSGYAMGIEFLDPYISGISFILVGSFVTLVLLATNRTNLLSQVNRD
ESACESFHRLCADECDDETLSMLSQQLSGYSDISNSNLSMRTASVCHSPA
PTISQRTIQAPASLLSLDSLHLSKQRMEQQAWSSNYGDASTVVAPRVQPA
MMFQQKPMRPLESQWYRHGQSNLAQGNTFTRSTQNLLMPSRLPSINRNVG
GADVSAWVAANQSVNQDLCTANLMRHYEEKQQNQLSRTSSQSSGFESQPR
PEAQCGTGAATVRDYGWSEARESQRNFAVFPPMPSPTPTITPSEYQYSRT
ALPQQQPTMQPGDLLRKWIEINSKSSQPIH*
BS29070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7744-PA | 680 | CG7744-PA | 1..680 | 1..680 | 3539 | 100 | Plus |
