BS29080.complete Sequence
1244 bp assembled on 2013-09-16
GenBank Submission: KX801807
> BS29080.complete
GAAGTTATCAGTCGACATGTATTTTTTCTTTGCCTTTTTTTCTTACAGCA
TGCGTGAACGCAGTCAAACGACCCCAAGAAGGCGACGAGCCGGTCCAAAA
CAGGCCTTACCTGGTGGCAGCTCCTCGGAGGGAGTGGGCGCCCTGGAATC
CCCCTATTATACCATTGACAACACGGAGGATATATATGGCACCACGCTGC
TGCCCTCGCAGCGCTGCTATGTGGATCCCTGGGATCTGGAGAACTATGAT
TATGTTCGCAAGAAGATCGATGATGTCACCGGTGGCGGTGGTGGTGATGG
TGATGGTGAGGCAATTGAACCTGCCTACGGAGGTGGTGGCAACTCGCTGA
CGACCAGTCCCACATACGGATACGGAGTGGGTGCCGCCGGTGCGGGTATG
GGTGTGGGCATGTCGGCCACAATGCCACGCCCCCACACCCAAAGTCGCCG
GGTGTCGCGTGCCCAGTGCCAACTTGAGTGCTGTGTGCCCCAAAGGACTC
GTCGCCGTAGCCGCAGCGCTCGCAAGGAGCCACTCTATACGGCCAGGAGC
GATATTTACGGTGTGCCCAGCCGCTATGAGGACTACATGGCCACCATGAC
CAGGCAGTTGCACCTGGACAACGGCGAGGATGAGGAGCCGGAAGATCTTT
ACGGCGAGGAGCAGCGGCAACTGTACAATGGCTTTGGAGGCTTCTCCAGC
ACCAGTTCCACGGAGCATCCCTCCTCCATTGGCGATGAGCAGCCCGTTCT
CCAACGACGCGCGGCCACGATGCAACGCCGCTCCGTGCCCAGCGAGATGC
AGCGGAGCACCAACATGGTCGGCAGCTATGGAACTGCCCCCCATCCGCGG
CGCAAGCGAAGCGGTAAGGCGGCGCCCATGGCCGCTCCGCCGCAGATCGA
TTTCCCCGCACCGCCGCCACTTTCGCCCGCCTACGACTACTGTAATCCCT
ATGCTTCACTGCCGTACTGCAGCATACCGGATTGCAGCGAATGCCAGCAG
CAGATCTATGCCGCACCCTCCGCCCTCTACGGAACCATGGGCGGCTTGGT
GGGTGGTGATGGCAGTCGGGTTAGGGGCTCATCGCCCCATCATTCCAGCG
GTGGTGACTCGTCGCTCTACTCGGGAATTTACGCACGTAAATTCGGACTG
AGCAAGAAGGGTCTACTGCAGATCGACTACTCATGCAGTTGGAACGATCT
GGACAGGGTGATGCAGCGCCATTACTGAAAGCTTTCTAGACCAT
BS29080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8854-RC | 1179 | CG8854-PC | 1..1179 | 50..1228 | 5895 | 100 | Plus |
| CG8854-RB | 1179 | CG8854-PB | 1..1179 | 50..1228 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8854-RB | 1927 | CG8854-RB | 471..1682 | 17..1228 | 6060 | 100 | Plus |
| CG8854-RC | 1628 | CG8854-RC | 202..1383 | 47..1228 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12225703..12226376 | 690..17 | 3370 | 100 | Minus |
| 2R | 25286936 | 2R | 12224706..12225246 | 1228..688 | 2705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:48:36 has no hits.
BS29080.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:40 Download gff for
BS29080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8854-RB | 482..1681 | 28..1227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:30 Download gff for
BS29080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8854-RB | 482..1681 | 28..1227 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:30 Download gff for
BS29080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12224707..12225244 | 690..1227 | 100 | <- | Minus |
| 2R | 12225704..12226365 | 28..689 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:40 Download gff for
BS29080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8112212..8112749 | 690..1227 | 100 | <- | Minus |
| arm_2R | 8113209..8113870 | 28..689 | 100 | | Minus |
BS29080.pep Sequence
Translation from 16 to 1227
> BS29080.pep
MYFFFAFFSYSMRERSQTTPRRRRAGPKQALPGGSSSEGVGALESPYYTI
DNTEDIYGTTLLPSQRCYVDPWDLENYDYVRKKIDDVTGGGGGDGDGEAI
EPAYGGGGNSLTTSPTYGYGVGAAGAGMGVGMSATMPRPHTQSRRVSRAQ
CQLECCVPQRTRRRSRSARKEPLYTARSDIYGVPSRYEDYMATMTRQLHL
DNGEDEEPEDLYGEEQRQLYNGFGGFSSTSSTEHPSSIGDEQPVLQRRAA
TMQRRSVPSEMQRSTNMVGSYGTAPHPRRKRSGKAAPMAAPPQIDFPAPP
PLSPAYDYCNPYASLPYCSIPDCSECQQQIYAAPSALYGTMGGLVGGDGS
RVRGSSPHHSSGGDSSLYSGIYARKFGLSKKGLLQIDYSCSWNDLDRVMQ
RHY*
BS29080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8854-PC | 392 | CG8854-PC | 1..392 | 12..403 | 2109 | 100 | Plus |
| CG8854-PB | 392 | CG8854-PB | 1..392 | 12..403 | 2109 | 100 | Plus |
