BS29090.complete Sequence
887 bp assembled on 2012-04-19
GenBank Submission: KX800654
> BS29090.complete
GAAGTTATCAGTCGACATGGACGCCATCAAGAAGAAGATGCAAGCGATGA
AGCTTGAGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAA
GCCAAGGATGCCAACTCCCGCGCCGACAAACTGAACGAGGAGGTGCGCGA
TCTGGAGAAGAAGTTCGTCCAGGTGGAGATCGATCTGGTTACCGCCAAGG
AGCAGCTGGAGAAGGCCAACACCGAGCTGGAGGAGAAGGAGAAACTCCTG
ACCGCCACCGAGTCCGAGGTGGCCACCCAGAACCGCAAGGTGCAACAGAT
TGAGGAGGATCTGGAGAAGTCCGAGGAGCGCTCGACCACCGCCCAACAGA
AGCTGCTGGAGGCCACCCAGTCGGCCGATGAGAACAACCGCATGTGCAAG
GTGCTGGAGAACCGTTCCCAGCAGGATGAGGAGCGCATGGACCAGCTGAC
CAACCAGTTGAAGGAGGCCCGCATGCTGGCTGAGGATGCCGATACCAAGT
CCGACGAGGTCTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAGGTG
GCTGAGGATCGTGTCCGCTCCGGCGAGTCCAAGATCATGGAGCTGGAGGA
GGAGCTGAAGGTTGTCGGCAACTCCCTGAAGTCCCTGGAGGTGTCCGAGG
AGAAGGCCAACCAGCGCGTGGAGGAGTTCAAGCGCGAGATGAAGACCCTG
TCCATCAAGTTGAAGGAGGCCGAGCAGCGCGCCGAGCACGCCGAGAAGCA
AGTGAAGCGCCTGCAGAAGGAGGTCGACAGGCTAGAGGACCGTCTCTTCA
ATGAGAAGGAAAAATACAAAGCAATCTGCGACGATTTGGACCAGACATTT
GCCGAACTTACTGGATATTAAAAGCTTTCTAGACCAT
BS29090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm2-RC | 855 | CG4843-PC | 1..855 | 17..871 | 4275 | 100 | Plus |
Tm2-RG | 855 | CG4843-PG | 1..774 | 17..790 | 3870 | 100 | Plus |
Tm2-RF | 855 | CG4843-PF | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm2-RC | 1980 | CG4843-RC | 108..965 | 16..873 | 4290 | 100 | Plus |
Tm2-RG | 1145 | CG4843-RG | 77..851 | 16..790 | 3875 | 100 | Plus |
Tm2-RF | 1200 | CG4843-RF | 132..906 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15312452..15313048 | 16..612 | 2985 | 100 | Plus |
3R | 32079331 | 3R | 15313107..15313286 | 609..788 | 900 | 100 | Plus |
3R | 32079331 | 3R | 15313590..15313675 | 788..873 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:36:16 has no hits.
BS29090.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 16:21:08 Download gff for
BS29090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm2-RC | 88..940 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:09 Download gff for
BS29090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm2-RC | 109..961 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:16 Download gff for
BS29090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm2-RC | 109..961 | 17..869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:16 Download gff for
BS29090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15313109..15313286 | 611..788 | 100 | -> | Plus |
3R | 15313591..15313671 | 789..869 | 100 | | Plus |
3R | 15312453..15313046 | 17..610 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:09 Download gff for
BS29090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11138175..11138768 | 17..610 | 100 | -> | Plus |
arm_3R | 11138831..11139008 | 611..788 | 100 | -> | Plus |
arm_3R | 11139313..11139393 | 789..869 | 100 | | Plus |
BS29090.pep Sequence
Translation from 16 to 870
> BS29090.pep
MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKF
VQVEIDLVTAKEQLEKANTELEEKEKLLTATESEVATQNRKVQQIEEDLE
KSEERSTTAQQKLLEATQSADENNRMCKVLENRSQQDEERMDQLTNQLKE
ARMLAEDADTKSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEEELKVV
GNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQ
KEVDRLEDRLFNEKEKYKAICDDLDQTFAELTGY*
BS29090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm2-PC | 284 | CG4843-PC | 1..284 | 1..284 | 1391 | 100 | Plus |
Tm2-PG | 284 | CG4843-PG | 1..284 | 1..284 | 1327 | 95.4 | Plus |
Tm2-PF | 284 | CG4843-PF | 1..284 | 1..284 | 1327 | 95.4 | Plus |
Tm2-PE | 284 | CG4843-PE | 1..284 | 1..284 | 1327 | 95.4 | Plus |
Tm2-PB | 284 | CG4843-PB | 1..284 | 1..284 | 1327 | 95.4 | Plus |