Clone BS29090 Report

Search the DGRC for BS29090

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:290
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptTm2-RC
Protein status:BS29090.pep: full length peptide match
Sequenced Size:887

Clone Sequence Records

BS29090.complete Sequence

887 bp assembled on 2012-04-19

GenBank Submission: KX800654

> BS29090.complete
GAAGTTATCAGTCGACATGGACGCCATCAAGAAGAAGATGCAAGCGATGA
AGCTTGAGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAA
GCCAAGGATGCCAACTCCCGCGCCGACAAACTGAACGAGGAGGTGCGCGA
TCTGGAGAAGAAGTTCGTCCAGGTGGAGATCGATCTGGTTACCGCCAAGG
AGCAGCTGGAGAAGGCCAACACCGAGCTGGAGGAGAAGGAGAAACTCCTG
ACCGCCACCGAGTCCGAGGTGGCCACCCAGAACCGCAAGGTGCAACAGAT
TGAGGAGGATCTGGAGAAGTCCGAGGAGCGCTCGACCACCGCCCAACAGA
AGCTGCTGGAGGCCACCCAGTCGGCCGATGAGAACAACCGCATGTGCAAG
GTGCTGGAGAACCGTTCCCAGCAGGATGAGGAGCGCATGGACCAGCTGAC
CAACCAGTTGAAGGAGGCCCGCATGCTGGCTGAGGATGCCGATACCAAGT
CCGACGAGGTCTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAGGTG
GCTGAGGATCGTGTCCGCTCCGGCGAGTCCAAGATCATGGAGCTGGAGGA
GGAGCTGAAGGTTGTCGGCAACTCCCTGAAGTCCCTGGAGGTGTCCGAGG
AGAAGGCCAACCAGCGCGTGGAGGAGTTCAAGCGCGAGATGAAGACCCTG
TCCATCAAGTTGAAGGAGGCCGAGCAGCGCGCCGAGCACGCCGAGAAGCA
AGTGAAGCGCCTGCAGAAGGAGGTCGACAGGCTAGAGGACCGTCTCTTCA
ATGAGAAGGAAAAATACAAAGCAATCTGCGACGATTTGGACCAGACATTT
GCCGAACTTACTGGATATTAAAAGCTTTCTAGACCAT

BS29090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tm2-RC 855 CG4843-PC 1..855 17..871 4275 100 Plus
Tm2-RG 855 CG4843-PG 1..774 17..790 3870 100 Plus
Tm2-RF 855 CG4843-PF 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tm2-RC 1980 CG4843-RC 108..965 16..873 4290 100 Plus
Tm2-RG 1145 CG4843-RG 77..851 16..790 3875 100 Plus
Tm2-RF 1200 CG4843-RF 132..906 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15312452..15313048 16..612 2985 100 Plus
3R 32079331 3R 15313107..15313286 609..788 900 100 Plus
3R 32079331 3R 15313590..15313675 788..873 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:36:16 has no hits.

BS29090.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 16:21:08 Download gff for BS29090.complete
Subject Subject Range Query Range Percent Splice Strand
Tm2-RC 88..940 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:09 Download gff for BS29090.complete
Subject Subject Range Query Range Percent Splice Strand
Tm2-RC 109..961 17..869 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:16 Download gff for BS29090.complete
Subject Subject Range Query Range Percent Splice Strand
Tm2-RC 109..961 17..869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:16 Download gff for BS29090.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15313109..15313286 611..788 100 -> Plus
3R 15313591..15313671 789..869 100   Plus
3R 15312453..15313046 17..610 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:09 Download gff for BS29090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11138175..11138768 17..610 100 -> Plus
arm_3R 11138831..11139008 611..788 100 -> Plus
arm_3R 11139313..11139393 789..869 100   Plus

BS29090.pep Sequence

Translation from 16 to 870

> BS29090.pep
MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKF
VQVEIDLVTAKEQLEKANTELEEKEKLLTATESEVATQNRKVQQIEEDLE
KSEERSTTAQQKLLEATQSADENNRMCKVLENRSQQDEERMDQLTNQLKE
ARMLAEDADTKSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEEELKVV
GNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQ
KEVDRLEDRLFNEKEKYKAICDDLDQTFAELTGY*

BS29090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tm2-PC 284 CG4843-PC 1..284 1..284 1391 100 Plus
Tm2-PG 284 CG4843-PG 1..284 1..284 1327 95.4 Plus
Tm2-PF 284 CG4843-PF 1..284 1..284 1327 95.4 Plus
Tm2-PE 284 CG4843-PE 1..284 1..284 1327 95.4 Plus
Tm2-PB 284 CG4843-PB 1..284 1..284 1327 95.4 Plus