BS29092.complete Sequence
1766 bp assembled on 2012-04-30
GenBank Submission: KX806218
> BS29092.complete
GAAGTTATCAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCC
TACATCATCAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGT
GTATGGACTCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCG
CCAGTCCGCAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGG
CAGGGACGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGG
CAACGATGAGTACAACGTTACACTGGCCATTGCCGGACTGACCCTGGAAG
ATACCACCAAAATCTACAATCTGAGGGCCAGCAATGAACTGGGACTGACG
GACTACCAGGTGCGAATCAGTTCGTCGAGCAAACCGCCCAGCAGCAGCCT
CGATGTGGCGGCAATCGTTGGCATTGTGGTCGCCGTTGCCGTTTTGGTCC
TGGTCGTTTTACTGATTGTGTTTGCACGGGCTACTGGCCGATGGTGTTTT
GGCGGCAAATCAATCAAGACGCCCACAAACGAAACTCAAATCGACAAGCA
ACTGGAGTTGGGAGCCCAGCAGAATCACGGTCAAAACGTAGCACTCTTGG
AAACACCCAATGGCATAACCTTGTTGGGCGCCAGTAAGCTGAGAGAGGTT
AATGGAAACGGAAACGGAAATGGCCAGCAGGATCGGTTGTCGGTTGAAAG
ACGCCATCACGATGAAGATGACAGCTTTGAATACGGAACGGATCGGGAGA
GCAGTGTATATAACCCCACCACGCGACCTCTGAAGAGCATCCTGATGAGC
CAGGCGGCAGGACGAAACTCCCGGAGCTCTGCCAGCGATAAGGATGAAGG
CAACGAGAACGCCGATCTCCTGCAGAAGGGCAATCAACTGGGGATTCCTG
AATCGCGCTTCTCACGCTGGCTGCCCAAGGATCAACGTGAGCTGATCGAA
AAGCAGGCGATGTTGCTTTCGGGAAGGGGCAAGTCGACGGCGCCAGCCAC
TCCACCCAAGCCCCAAAGACCCCCGATGGGAACGACTACCACTGCCACAA
CGACGACGACACCGACGACGCCAAAGTTGCCACAGGAAACGGAAATCTGA
AAGCTTTCTAGACCAT
BS29092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas3-RE | 1734 | CG5803-PE | 1..1734 | 17..1750 | 8670 | 100 | Plus |
| Fas3-RD | 1734 | CG5803-PD | 1..1734 | 17..1750 | 8670 | 100 | Plus |
| Fas3-RF | 1206 | CG5803-PF | 1..1169 | 17..1185 | 5845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas3-RE | 2567 | CG5803-RE | 586..2320 | 16..1750 | 8675 | 100 | Plus |
| Fas3-RD | 4084 | CG5803-RD | 586..2320 | 16..1750 | 8675 | 100 | Plus |
| Fas3-RF | 2422 | CG5803-RF | 586..1755 | 16..1185 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18388382..18388946 | 1186..1750 | 2825 | 100 | Plus |
| 2L | 23513712 | 2L | 18384459..18384894 | 720..1155 | 2180 | 100 | Plus |
| 2L | 23513712 | 2L | 18383839..18384180 | 378..719 | 1710 | 100 | Plus |
| 2L | 23513712 | 2L | 18383399..18383719 | 57..377 | 1605 | 100 | Plus |
| 2L | 23513712 | 2L | 18320687..18320730 | 16..59 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:51:34 has no hits.
BS29092.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:34 Download gff for
BS29092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RE | 588..2320 | 17..1749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:06 Download gff for
BS29092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RD | 587..2319 | 17..1749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:23 Download gff for
BS29092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RD | 587..2319 | 17..1749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:23 Download gff for
BS29092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18320688..18320730 | 17..59 | 100 | -> | Plus |
| 2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
| 2L | 18383839..18384180 | 378..719 | 100 | -> | Plus |
| 2L | 18384459..18384893 | 720..1154 | 100 | -> | Plus |
| 2L | 18387287..18387317 | 1155..1185 | 100 | -> | Plus |
| 2L | 18388382..18388945 | 1186..1749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:06 Download gff for
BS29092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18320688..18320730 | 17..59 | 100 | -> | Plus |
| arm_2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
| arm_2L | 18383839..18384180 | 378..719 | 100 | -> | Plus |
| arm_2L | 18384459..18384893 | 720..1154 | 100 | -> | Plus |
| arm_2L | 18387287..18387317 | 1155..1185 | 100 | -> | Plus |
| arm_2L | 18388382..18388945 | 1186..1749 | 100 | | Plus |
BS29092.pep Sequence
Translation from 16 to 1749
> BS29092.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETQIDKQLELGA
QQNHGQNVALLETPNGITLLGASKLREVNGNGNGNGQQDRLSVERRHHDE
DDSFEYGTDRESSVYNPTTRPLKSILMSQAAGRNSRSSASDKDEGNENAD
LLQKGNQLGIPESRFSRWLPKDQRELIEKQAMLLSGRGKSTAPATPPKPQ
RPPMGTTTTATTTTTPTTPKLPQETEI*
BS29092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas3-PE | 577 | CG5803-PE | 1..577 | 1..577 | 2991 | 100 | Plus |
| Fas3-PD | 577 | CG5803-PD | 1..577 | 1..577 | 2991 | 100 | Plus |
| Fas3-PG | 557 | CG5803-PG | 1..530 | 1..566 | 2050 | 74.4 | Plus |
| Fas3-PF | 401 | CG5803-PF | 1..391 | 1..391 | 2024 | 99.7 | Plus |
| Fas3-PB | 401 | CG5803-PB | 1..391 | 1..391 | 2024 | 99.7 | Plus |
