BS29102.complete Sequence
2234 bp assembled on 2012-05-15
GenBank Submission: KX801914
> BS29102.complete
GAAGTTATCAGTCGACATGCGCAATATACTGCTTTGTGAAAATATGACCA
AGGTGCAAAAAGAGGTGCGATGCGACCATTGCGGCACAAGCCAAGGGTCC
AAGAGTGTTTTTTCAGGTCAGAAGGTGTTCCTGGGCAGGAAAATAACAGA
CGTACTGGAGACCATCACCCACAGAAGCATCCCATCATCCTTGCCCATCA
AGATATGCTTCGTCTGCACCTCCACATTCATGTCCAGCGCGGCACTAATC
GAGAAGGTCCGCGAGACGGTGGACAGGGTACAGGAGCAGCCCGCCAAGAA
GACTAAGGTAGCGGAAATAGAGGAGCCATCGACACAGGAAAGCGATAAGA
AGGCGGTTAAGGTGCCAAAAAAGAACACCACCCTCCGTCAGCGCAGCAAG
TCCATAGCAGCTTTCCCGCCAAGCTTTGTGAATGGAGCTAATACTAATAC
AGAAATCGAGATCATTAGTGCTTCGCCCAAGAAACTCGATAAGACCCCTA
AAAAGCAGATATCTCGACTCTTCGAGGATAATCTTAACGATTCGGTTAAG
CTGACGCCCGCCAAAGAGGTGTCGTCTACTAAAAAGGCTTTCCTTAATCT
CTTTGGCAACGGCGGCAACGATGCCATCGAAGTACTGACCGAGAGCGAGG
AAGAGGAGGACTCGGATAAAGGTCCTATCACCATTAACACAAATAACTTT
CAGTGTCCAGAGTGCGAATTTCACGCAAAGTTTCCCAAACCGTACAAGGA
GCATCTGCAGAAGGAGCACGGTCTTCAAAGACCACGCATATACCCCTGTA
CCTTGTGTATTAAGACTTTTGGAGTGCTTAAGACTTTGAAAAATCATTTA
AGGGACACTCACTCACGCACTTTTGAAAGCGAGGCTAAGACTAAGGCGAA
GGAAAGCAAGGAAAAAGAGGCTAAGTCAGGGGCCAAGAATAAAATTGACG
CAAAGGCAAAGGAGACCAATGCTGTGAGTCAAAGGAAGAAGCCAAAAGAA
AAAAAGTCCAAAGAGAAAAAGACAGAGATCAAATGTAATGTTGAAACCAA
AGTGGTTGACGAAATCGACGACCAAGTGAACAACAAAAAGGGCACAGATA
GTGAGGACGCAGACCAGACCCAGGCTACCAAAATCGCCTCCTTTAAAGCG
CTAAATGAGTCATTAATGAAGAAAAGGATGTTAGAGAACGTGATCGACTC
GGAATATACATTTGCCATCAATGGATCCAGCGCCTCCACTCCCAGGGCGG
ATTCGAATAATTTTCAGTGCGAGATCTGCGACTGTGAGCTGATGACCGCC
AAGCAGATGCAGGAGCACATGAAGACCGTCCACAGCATCGACAAGCCAAA
GGTTTTCAAGTGCCACGTCTGCGAGAAGAGTTTGGCTACCAAACAGTCGC
TGAAAACGCACATGACTCTACATGCCGACGGTGCTGAAGCGCCGAACTCC
AGCAAGCGAAAGATTCTGCAGGACGAGGATGAGGACGTAGACATTCTGGG
TACGACTCAGATTGAAAACACGGCCGAGAAGGTTGAAGGACCTAAGAAAT
CACAACAAAGCCCTACTAAAGCCGCAAAGTTCACCAACCGAAAGATTCTG
CAAGAAGAGGATGAGGTTGTGGAAATTGTGGACGCTTTTAAGACTGACAA
CACCGCGGAGGATGATGAAGGACCCGCAGAAGAAAAGATTATACGATCCA
GGAACAACATTCAGCACCAGGTCGATGGAGGCATGATTGCACCTCGGTCG
CCAGCTAAAAAGACAAAGAAGACCAGTCACGTAGATCTGTCTGTGTCCAC
AACCAATGGCAATTCGCCTGCAAAGTCAGAAAAACGAAAAAAACAAGACA
AATCTGAGGACACGCTCCCCTCATCTGATGTAGACATAGTGGAAGAAATC
AACTACAACGTGCGGCCGCACAAAAAGGCTCGCCTGGAGTCCATTGGTGA
CTCAACAGCCGACGAGTCGACCCTCAGCTGCGACCGGTGCGGGAAGTTCG
TCAAATCGCGTCAACGCTTGGACTCGCACATGGAGAAAAAGCACGCCGCC
AAACTACAGTGCACCCTATGCAAGGAAGTCTACCAGAACCAAATGGATTA
CGTGGCTCACTTCTCGAACTGTGGTTCCGAAGGTGGACTTCCATGCGGCG
TAGCCAATTGCAAGAAGGTCTTCACGGAGGCCAACTTCCTATCCTCGCAC
CTGCGCAAGCGCCACTAGAAGCTTTCTAGACCAT
BS29102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RB | 2202 | CG2199-PB | 1..2202 | 17..2218 | 11010 | 100 | Plus |
| CG2199-RC | 2175 | CG2199-PC | 1..2175 | 44..2218 | 10875 | 100 | Plus |
| CG2199-RA | 2175 | CG2199-PA | 1..2175 | 44..2218 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RB | 2576 | CG2199-RB | 13..2214 | 17..2218 | 11010 | 100 | Plus |
| CG2199-RC | 2640 | CG2199-RC | 92..2278 | 32..2218 | 10920 | 100 | Plus |
| CG2199-RA | 2846 | CG2199-RA | 298..2484 | 32..2218 | 10920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1339822..1341861 | 2218..179 | 10200 | 100 | Minus |
| 3L | 28110227 | 3L | 1341928..1342074 | 178..32 | 720 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:57:05 has no hits.
BS29102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:51 Download gff for
BS29102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 13..2214 | 17..2218 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:04 Download gff for
BS29102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 13..2214 | 17..2218 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:42 Download gff for
BS29102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 13..2214 | 17..2218 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:42 Download gff for
BS29102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1339822..1341861 | 179..2218 | 100 | <- | Minus |
| 3L | 1341928..1342069 | 37..178 | 100 | <- | Minus |
| 3L | 1342372..1342391 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:04 Download gff for
BS29102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1339822..1341861 | 179..2218 | 100 | <- | Minus |
| arm_3L | 1341928..1342069 | 37..178 | 100 | <- | Minus |
| arm_3L | 1342372..1342391 | 17..36 | 100 | | Minus |
BS29102.pep Sequence
Translation from 16 to 2217
> BS29102.pep
MRNILLCENMTKVQKEVRCDHCGTSQGSKSVFSGQKVFLGRKITDVLETI
THRSIPSSLPIKICFVCTSTFMSSAALIEKVRETVDRVQEQPAKKTKVAE
IEEPSTQESDKKAVKVPKKNTTLRQRSKSIAAFPPSFVNGANTNTEIEII
SASPKKLDKTPKKQISRLFEDNLNDSVKLTPAKEVSSTKKAFLNLFGNGG
NDAIEVLTESEEEEDSDKGPITINTNNFQCPECEFHAKFPKPYKEHLQKE
HGLQRPRIYPCTLCIKTFGVLKTLKNHLRDTHSRTFESEAKTKAKESKEK
EAKSGAKNKIDAKAKETNAVSQRKKPKEKKSKEKKTEIKCNVETKVVDEI
DDQVNNKKGTDSEDADQTQATKIASFKALNESLMKKRMLENVIDSEYTFA
INGSSASTPRADSNNFQCEICDCELMTAKQMQEHMKTVHSIDKPKVFKCH
VCEKSLATKQSLKTHMTLHADGAEAPNSSKRKILQDEDEDVDILGTTQIE
NTAEKVEGPKKSQQSPTKAAKFTNRKILQEEDEVVEIVDAFKTDNTAEDD
EGPAEEKIIRSRNNIQHQVDGGMIAPRSPAKKTKKTSHVDLSVSTTNGNS
PAKSEKRKKQDKSEDTLPSSDVDIVEEINYNVRPHKKARLESIGDSTADE
STLSCDRCGKFVKSRQRLDSHMEKKHAAKLQCTLCKEVYQNQMDYVAHFS
NCGSEGGLPCGVANCKKVFTEANFLSSHLRKRH*
BS29102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-PB | 733 | CG2199-PB | 1..733 | 1..733 | 3784 | 100 | Plus |
| CG2199-PC | 724 | CG2199-PC | 1..724 | 10..733 | 3736 | 100 | Plus |
| CG2199-PA | 724 | CG2199-PA | 1..724 | 10..733 | 3736 | 100 | Plus |
