BS29105.complete Sequence
773 bp assembled on 2012-04-25
GenBank Submission: KX805193
> BS29105.complete
GAAGTTATCAGTCGACATGAAACCCATTTGCTTCGCACTCTGCGTATTTT
CGCTAGGCCTTTTCTATTTGGCCAGCGCTGAGATTGGTGAAAATGTGAAG
ATCCAGACGTACAAGAAGTATAGTTCATCCTGCAAGGAGTTGAACCCAAA
GAAGAGCGGTGTCCAGAAGATCCAAGTGGGCTCCGATGTAATCGAAGTGT
ACTGCGATGTGACAATCGCCGGAAAGGGCTGGCTGGTCGTCCAGCGAAGA
GTCAGTGTGGAGGAGAACTTCTACCGCAATTGGACCTCTTATCAGACGGG
TTTCGGTGACCTTAAGGGTAACTTCTTCATCGGATTGAATAATCTGAACA
AGATCTCGTCCCTGCAACCCCAAGAGTTGTATATTGAGTTGGTGGACTTT
GCTGGCGAGAAGCGGTATGCCCACTACAGTGTGTTTCACGTGGGCAACGT
GTACAGTAATTACCCGATAACCCAGCTGGGCGCGTACAGTGGAACCGCCG
GAGACAGTTTGAGCTATCATCTGTACCAACCTTTCAGCACCTTCGATAGG
GATAACGACAATGCCACTATCAACTGTGCTGCCAGATATATGGGAGCCTG
GTGGTACAGAGAATGCCTTAGCAGCAATCTGAATGGTGCATATCTGGGTG
GAAACCACACCGATCCCGCGCTGTTTGGCTCTGGAATCGTTTGGGGAGAA
TGGAAGGGCTTCACATACAGCTACAAGACTGTTAACATTATGGTGCGACC
AAAATAAAAGCTTTCTAGACCAT
BS29105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5550-RA | 741 | CG5550-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
| CG5550-RB | 753 | CG5550-PB | 1..753 | 17..757 | 3550 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5550-RA | 926 | CG5550-RA | 26..766 | 17..757 | 3705 | 100 | Plus |
| CG5550-RB | 938 | CG5550-RB | 26..778 | 17..757 | 3550 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16816614..16817221 | 17..624 | 3040 | 100 | Plus |
| 2R | 25286936 | 2R | 16817281..16817417 | 621..757 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:25:29 has no hits.
BS29105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:50 Download gff for
BS29105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5550-RA | 24..762 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:33 Download gff for
BS29105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5550-RA | 26..764 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:56 Download gff for
BS29105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5550-RA | 26..764 | 17..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:56 Download gff for
BS29105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16816614..16817221 | 17..624 | 100 | -> | Plus |
| 2R | 16817285..16817415 | 625..755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:33 Download gff for
BS29105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12704119..12704726 | 17..624 | 100 | -> | Plus |
| arm_2R | 12704790..12704920 | 625..755 | 100 | | Plus |
BS29105.pep Sequence
Translation from 16 to 756
> BS29105.pep
MKPICFALCVFSLGLFYLASAEIGENVKIQTYKKYSSSCKELNPKKSGVQ
KIQVGSDVIEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDLK
GNFFIGLNNLNKISSLQPQELYIELVDFAGEKRYAHYSVFHVGNVYSNYP
ITQLGAYSGTAGDSLSYHLYQPFSTFDRDNDNATINCAARYMGAWWYREC
LSSNLNGAYLGGNHTDPALFGSGIVWGEWKGFTYSYKTVNIMVRPK*
BS29105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5550-PA | 246 | CG5550-PA | 1..246 | 1..246 | 1331 | 100 | Plus |
| CG5550-PB | 250 | CG5550-PB | 1..250 | 1..246 | 1316 | 98.4 | Plus |
| CG30281-PA | 291 | CG30281-PA | 66..274 | 37..246 | 535 | 46.9 | Plus |
| CG30280-PB | 272 | CG30280-PB | 50..263 | 35..246 | 516 | 42.5 | Plus |
| CG9500-PA | 272 | CG9500-PA | 56..267 | 34..246 | 506 | 46.7 | Plus |
