BS29111.complete Sequence
1250 bp assembled on 2012-04-25
GenBank Submission: KX805909
> BS29111.complete
GAAGTTATCAGTCGACATGCGACGGGAGCGAGTGGTGCTGCTGTGCCTGG
CGCTGCTCGGATTGCAGCAGGTGTCCAGGGCCACTCTGCGTCAGTCGCGC
GAAATCATCATCACAGATGCGGTGCGGCGCATCCAGAACGACGGCTACAA
CGTGGAGCGCCACTCGGTGACGACGAAGGACGGATATGTGCTCACCCTGC
ACCGCATCCCGCAGGTGGATCCCGAACTGGGCAGTCTGCTGAGACGCCCT
GTCGTCTTCCTGCTCTCCGGACTCTATGCCTCATCGGATGTGTGGCTGCT
GAACGGGCGGGAGGACTCCTTAGCCTACCTCCTTTGGCGAGCAGGATACG
ATGTGTGGCTGGGAAACAACAGAGGCAACATCTACTGCCGGAAGAACATG
TGGCGGAACACCACAGAACGGGAGTTCTGGGACTTCAGCTGGCACGAGAT
GGGCGTCTACGATTTGCCAGCCCAGGTGGATTACGTGCTCCGGACAACCG
GACAGAAGGCTATGCACTTTGTGGGGATCTCGCAGGGCGGCACCGTCTTC
CTGGTCCTCAATTCGATGATGCCACAGTATAATGCCGTTTTCAAGAGCGC
CACCCTGCTGGCCCCGGTGGCCTATGTGAGCAATACAAAGAGTGGGCTGG
CCAAGGTCATTGGTCCAGTGCTTGGCACACGGAACTATGTCTCTAAGATG
CTTGAGGGCGTCGAGATGTTCTCCACGAACAAGTTCTTCAAGAAGTTCCT
ATCGATGACGTGTCTGGAGAACGAAAAGCCACTGGTCTGCATCAGTCGCC
TGTGGCCAGCCGTTGGCTATGACACCCGATTCCTTAACAAGACGTTATTG
CCCGACCTGATGGCCAACTTTCCGGCGGGCGGATCGGTGAAGCAGCTGAT
GCACTACTTCCAGGGCTATGTGTCCACCAGATTCCGGCAGTATGACTACG
GTCCCGAGCGGAACTGGCTGCACTATCAGCAACTGGAGCCACCGGAGTAC
GCGCTGGAGAACGTGTCCACGCCAGTTACGGTCTTCTTCTCGGAAAACGA
CTACATTGTGGCGCCGGCGGACATCTGGCGATTGCTCACCCGGTTGCCCA
ACGTGGAAGCCGTGTACAAGGTTCCCTGGAAGCGATGGAACCACTTTGAC
TTCATCTGCGGATTGGGGGTCAGGGAGTACATATTCGACAACATTGTGCT
TTCCATGAACCGCTACGAGCAGCGGCGACGCTGAAAGCTTTCTAGACCAT
BS29111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6753-RB | 1218 | CG6753-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6753-RB | 1774 | CG6753-RB | 378..1596 | 16..1234 | 6095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12640341..12641283 | 1234..292 | 4715 | 100 | Minus |
| 3R | 32079331 | 3R | 12641538..12641711 | 294..121 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 12641998..12642105 | 123..16 | 540 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2852..2912 | 363..424 | 127 | 69.4 | Plus |
BS29111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:48 Download gff for
BS29111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 470..1686 | 17..1233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:22 Download gff for
BS29111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 379..1595 | 17..1233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:35 Download gff for
BS29111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 379..1595 | 17..1233 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:35 Download gff for
BS29111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12640342..12641283 | 292..1233 | 100 | <- | Minus |
| 3R | 12641541..12641710 | 122..291 | 100 | <- | Minus |
| 3R | 12642000..12642104 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:22 Download gff for
BS29111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8467263..8467432 | 122..291 | 100 | <- | Minus |
| arm_3R | 8467722..8467826 | 17..121 | 100 | | Minus |
| arm_3R | 8466064..8467005 | 292..1233 | 100 | <- | Minus |
BS29111.pep Sequence
Translation from 16 to 1233
> BS29111.pep
MRRERVVLLCLALLGLQQVSRATLRQSREIIITDAVRRIQNDGYNVERHS
VTTKDGYVLTLHRIPQVDPELGSLLRRPVVFLLSGLYASSDVWLLNGRED
SLAYLLWRAGYDVWLGNNRGNIYCRKNMWRNTTEREFWDFSWHEMGVYDL
PAQVDYVLRTTGQKAMHFVGISQGGTVFLVLNSMMPQYNAVFKSATLLAP
VAYVSNTKSGLAKVIGPVLGTRNYVSKMLEGVEMFSTNKFFKKFLSMTCL
ENEKPLVCISRLWPAVGYDTRFLNKTLLPDLMANFPAGGSVKQLMHYFQG
YVSTRFRQYDYGPERNWLHYQQLEPPEYALENVSTPVTVFFSENDYIVAP
ADIWRLLTRLPNVEAVYKVPWKRWNHFDFICGLGVREYIFDNIVLSMNRY
EQRRR*
BS29111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6753-PB | 405 | CG6753-PB | 1..405 | 1..405 | 2154 | 100 | Plus |
| Lip3-PA | 394 | CG8823-PA | 25..394 | 32..401 | 819 | 43.3 | Plus |
| CG8093-PB | 398 | CG8093-PB | 3..396 | 6..398 | 793 | 40.7 | Plus |
| CG8093-PA | 398 | CG8093-PA | 3..396 | 6..398 | 793 | 40.7 | Plus |
| CG3635-PB | 425 | CG3635-PB | 25..420 | 3..402 | 766 | 41.4 | Plus |
