BS29112.complete Sequence
1160 bp assembled on 2012-04-25
GenBank Submission: KX801387
> BS29112.complete
GAAGTTATCAGTCGACATGTCTAAAACGCCGTCGTTCGACAAGGATCGCG
ATTACATAGGCTTTGCCACGCTTCCAGAGCAAGTGCACCGGAAGTCGGTG
AAGCGGGGCTTCGAGTTCACCCTCATGGTGGTCGGCGAGTCCGGACTGGG
CAAGTCCACGCTGATCAACAGTCTCTTTCTGGGCGATCTCTACAAGAACC
GGCAGATGCCCAATGTGGAGGAGCGCATCGAGAAGACGACGAAGGTGGAG
AAGAAGACGATGGACATCGAGGAGCGGGGCGTCCGGCTCCGGCTGACGGT
GGTGGACACCCCGGGATTCGGGGATGCCATCAACTGTGAGGACAGCTGGC
GCGTCTGCACCCAGTACATCGACGAGCAGTTCCGCCAGTACTTCACCGAC
GAGAGCGGCCTGAATCGCCGCAACATCCAGGACAATCGGGTGCACTGCTG
CCTCTACTTCGTGCCGCCATGGGGCCACAGCCTGCGACAGATGGACCTCG
ATTTGATACGGCGGCTGCACCGCAAGGTGAACATCGTGCTGGTGATCGGC
AAGGCCGATTGCCTCAACAAGCAGGAGGTGCGCAAGCTGAAGGAGCGCAT
CCTGCAGGACCTGGAGGACAACCACATCCAGCTGTATCAGTTCCCCGAAT
GCGACTCCGACGAGGACGACGACTTCAAGCAGCAGGACCGCGAACTGAAG
GCCTCCATTCCGTTCGCCGTCGTCGGCAGCAACACCATTCTGGAGGTGGC
CGGCAAGAAGGTCCGAGGGCGCCAGTATCCGTGGGGCGTGGTAAACGTGG
AGGATCCGGAGCACAGCGACTTCATCAAGCTGCGCACCTTCTTGATATCC
ACGCACATGCAGGACCTCAAGGACACCACGCAGGACGTGCACTACGAGAA
CTTCCGGGCGCAGTGCATCTCGCAGATTTCGCAGCACGCGCTGCGTGAGC
GCGGCAAGTTGAAGCGGGACTCGATTAGCTCGACCAATGGATTCGACGCG
GCCATCTCGGAGACGGACAGGCTGCTCCTGCAAAAGGACGAGGAGATAAG
GAGGATGCAGGACATGCTCACCCAGATGCAGGAGAAGCTCAAGCAGACCC
ATCTCATGGAGATGAAGAAGAATGACAGCGTGATCGACGTCTAGAAGCTT
TCTAGACCAT
BS29112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep4-RG | 1128 | CG9699-PG | 1..1128 | 17..1144 | 5640 | 100 | Plus |
| Sep4-RC | 1284 | CG9699-PC | 161..1284 | 21..1144 | 5620 | 100 | Plus |
| Sep4-RE | 1284 | CG9699-PE | 161..1284 | 21..1144 | 5620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep4-RG | 2433 | CG9699-RG | 369..1498 | 15..1144 | 5650 | 100 | Plus |
| Sep4-RC | 2896 | CG9699-RC | 838..1961 | 21..1144 | 5620 | 100 | Plus |
| Sep4-RE | 2915 | CG9699-RE | 857..1980 | 21..1144 | 5620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16686310..16686769 | 480..21 | 2300 | 100 | Minus |
| X | 23542271 | X | 16685507..16685913 | 884..478 | 2035 | 100 | Minus |
| X | 23542271 | X | 16685151..16685414 | 1144..881 | 1320 | 100 | Minus |
| X | 23542271 | X | 21359566..21359675 | 83..192 | 340 | 87.3 | Plus |
| X | 23542271 | X | 21359805..21359880 | 256..331 | 200 | 84.2 | Plus |
| 2R | 25286936 | 2R | 8239094..8239270 | 730..906 | 195 | 74 | Plus |
Blast to na_te.dros performed 2014-11-28 05:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 1539..1569 | 1048..1078 | 110 | 83.9 | Plus |
BS29112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:49 Download gff for
BS29112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 352..1479 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:26 Download gff for
BS29112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 371..1498 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:40 Download gff for
BS29112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 371..1498 | 17..1144 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:40 Download gff for
BS29112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16685151..16685411 | 884..1144 | 100 | <- | Minus |
| X | 16685508..16685910 | 481..883 | 100 | <- | Minus |
| X | 16686310..16686771 | 17..480 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:26 Download gff for
BS29112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16579184..16579444 | 884..1144 | 100 | <- | Minus |
| arm_X | 16579541..16579943 | 481..883 | 100 | <- | Minus |
| arm_X | 16580343..16580804 | 17..480 | 99 | | Minus |
BS29112.pep Sequence
Translation from 16 to 1143
> BS29112.pep
MSKTPSFDKDRDYIGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLI
NSLFLGDLYKNRQMPNVEERIEKTTKVEKKTMDIEERGVRLRLTVVDTPG
FGDAINCEDSWRVCTQYIDEQFRQYFTDESGLNRRNIQDNRVHCCLYFVP
PWGHSLRQMDLDLIRRLHRKVNIVLVIGKADCLNKQEVRKLKERILQDLE
DNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVR
GRQYPWGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQC
ISQISQHALRERGKLKRDSISSTNGFDAAISETDRLLLQKDEEIRRMQDM
LTQMQEKLKQTHLMEMKKNDSVIDV*
BS29112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep4-PG | 375 | CG9699-PG | 1..375 | 1..375 | 1957 | 100 | Plus |
| Sep4-PC | 427 | CG9699-PC | 55..427 | 3..375 | 1948 | 100 | Plus |
| Sep4-PE | 427 | CG9699-PE | 55..427 | 3..375 | 1948 | 100 | Plus |
| Sep4-PD | 427 | CG9699-PD | 55..427 | 3..375 | 1948 | 100 | Plus |
| Sep4-PB | 427 | CG9699-PB | 55..427 | 3..375 | 1948 | 100 | Plus |
