BS29117.complete Sequence
581 bp assembled on 2012-04-25
GenBank Submission: KX801382
> BS29117.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGTCCATGCACTGGGTAACACCCAAGACCA
AGGATCGCATGCTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGA
ACCGGTGCAGGATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCC
CGCCCACCGGCGGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTC
GCAAGGGCGAGTGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGC
AACTACGAGATCTAAAAGCTTTCTAGACCAT
BS29117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RB | 549 | CG2239-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
jdp-RC | 513 | CG2239-PC | 1..306 | 17..322 | 1530 | 100 | Plus |
jdp-RA | 588 | CG2239-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RB | 1921 | CG2239-RB | 101..649 | 17..565 | 2745 | 100 | Plus |
jdp-RC | 663 | CG2239-RC | 101..406 | 17..322 | 1530 | 100 | Plus |
jdp-RA | 1960 | CG2239-RA | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518331..30518575 | 565..321 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 30519647..30519765 | 322..204 | 595 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:27:33 has no hits.
BS29117.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:54 Download gff for
BS29117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RB | 103..649 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:56 Download gff for
BS29117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RB | 101..647 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:41 Download gff for
BS29117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RB | 101..647 | 17..563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:41 Download gff for
BS29117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30518333..30518573 | 323..563 | 100 | <- | Minus |
3R | 30519647..30519763 | 206..322 | 100 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:56 Download gff for
BS29117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
arm_3R | 26344055..26344295 | 323..563 | 100 | <- | Minus |
arm_3R | 26345369..26345485 | 206..322 | 100 | <- | Minus |
BS29117.pep Sequence
Translation from 16 to 564
> BS29117.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQSMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGGLTAASPNPAHRRA
SEGGAALYYGSRKGEWGGENTDVANKFRNYEI*
BS29117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-PB | 182 | CG2239-PB | 1..182 | 1..182 | 983 | 100 | Plus |
jdp-PA | 195 | CG2239-PA | 1..195 | 1..182 | 959 | 93.3 | Plus |
jdp-PC | 170 | CG2239-PC | 1..120 | 1..120 | 553 | 86.7 | Plus |
DnaJ-1-PA | 334 | CG10578-PA | 3..72 | 16..86 | 152 | 40.8 | Plus |
DnaJ-1-PB | 334 | CG10578-PB | 3..72 | 16..86 | 152 | 40.8 | Plus |