BS29118.complete Sequence
1727 bp assembled on 2012-04-25
GenBank Submission: KX801008
> BS29118.complete
GAAGTTATCAGTCGACATGGCCGGTCTGGTTAAGAGCGATACGGAGGACT
TTATCGACTGGTGGCCGCACACGGTGTTCTATCAGATCTACCCGAGGTCA
TTCAAGGACAGCAATGGCGATGGTATCGGCGATTTGAAAGGAATCACCTC
CAAGCTGCGCTATCTGGCGGACACTGGCATCACGGCCACCTGGTTGAGTC
CCATTTTTCAGTCGCCCATGATTGACTTTGGCTATGATATATCGGATTAC
AAGGCAATCCAGCCGGAGTATGGCACCATGCAGGATTTCGAGGAGCTGAT
CGACACGGCTTTCGAGCTGGGCATCAAGGTTGTTCTGGACTTTGTGCCGA
ATCACAGCTCGGATCAGCATGAGTGGTTCAAGAAGTCTGCGGCAAGGGAG
CCGGGTTACGAGGATTTCTATGTGTGGCACGATGGCATCGTCCAGGAGAA
TGGCACTCGGGTGCCACCCAACAACTGGCCATCGGTGTTCTACGGATCCG
CTTGGGAGTGGCACGAAGGTCGTGAGCAGTATTACCTGCACCAGTTCACC
AAGGAGCAGCCGGACTTGAACTATCGCAATCCCAAAGTGGTTCAGGCCAT
GGATGATGTGTTGCTTTTCTGGCTCAACAAGGGCGTAGCTGGTTTCCGCA
TCGATGCAGTGAATCATTTGTTTGAGGACGAATCTCTTAAAGATGAGCCA
TTGAGTGGCAAAACAACGGATTCACTTTCCTATGACTACACTAAGCACAT
CTACTCGAGAGATCTGCCAGAAGTCTTGGAAATGATTCATCACTGGAGGC
AACTGCTGGATGACTTTAGTGCCAAGCACCCCGAAAGACCCACACGCATC
ATGATGACGGAGGCGTACGCAGGATTAACCCAGCTGGCGGACTACTACGA
GGATTCCAACGGGGTTCGGGGCTCCCATCTGCCCTTCAACTTTCACTTTA
TCACGGATGTCAAAGGCGACTCGGATGCGCGTGACTATGTCTACAACGTG
GAGAAGTGGCTGATCTACATGCCACGCGGGCACGCGGCCAACTGGGTCAT
GGGCAACCACGACAACCCCCGAGTCGCTTCTCGATTCGGTCCAGCCAGTG
TGGACGCCATGAACATGCTACTGCTCACCCTTCCCGGTGTCGCCGTCACT
TATAATGGCGAGGAGCTGGGCATGGTGGACTACCGCGAACTGAGCTGGGA
GGAAACGGTGGATCCACCGGCCAGAAATGTTGGAGAGAAGCTATACCAGG
AGGTCTCCCGTGACCCAGTCCGAACACCGTTCCAGTGGAATAACGAGACC
AATGCTGGTTTTTCCACTGCCGCCAAAACCTGGCTGCCTGTCCACCCGAA
CTACCTCGAGCTCAACCTTGAGGCCCAGAAGGTGGCCAACAGGAGCCATT
ACCAGGTCTACAAGGATCTGCTTGAGCTGCGAAAATCGGCCATTATGCGT
GTGGGCCGATTTAATATTGAACCCCTTACTCGTTGGGTGTTTGCCTTTAA
GCGGTCCTATCCCAATTTTGAGTCGATAATTACCGTGATAAATGTGAGCG
ACAAGGAGCAGTTGGTGGATCTCTCAGAGTTTCTTAGCCAGCCTAAGAAA
CTAGTGGTTGAAGTTTCCGGCGTGGATTCCAAATATCAACCTGGTCAATC
CCTCGCCGCAAGTGCATTGCTCCTGGCCGCCCGTGAGGGTCTCGTCTGTC
GGCTGGTCTAGAAGCTTTCTAGACCAT
BS29118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-B2-RD | 1695 | CG14935-PD | 1..1695 | 17..1711 | 8445 | 99.9 | Plus |
| Mal-B2-RC | 1695 | CG14935-PC | 1..1695 | 17..1711 | 8445 | 99.9 | Plus |
| Mal-B2-RA | 1695 | CG14935-PA | 1..1695 | 17..1711 | 8445 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-B2-RD | 1927 | CG14935-RD | 106..1800 | 17..1711 | 8445 | 99.9 | Plus |
| Mal-B2-RC | 2237 | CG14935-RC | 106..1800 | 17..1711 | 8445 | 99.9 | Plus |
| Mal-B2-RA | 1935 | CG14935-RA | 114..1808 | 17..1711 | 8445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11850412..11851552 | 17..1157 | 5675 | 99.8 | Plus |
| 2L | 23513712 | 2L | 11851826..11852024 | 1307..1505 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 11847327..11847925 | 59..657 | 820 | 75.8 | Plus |
| 2L | 23513712 | 2L | 11851608..11851770 | 1147..1309 | 770 | 98.2 | Plus |
| 2L | 23513712 | 2L | 11852080..11852221 | 1503..1644 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 11852377..11852444 | 1644..1711 | 340 | 100 | Plus |
| 2L | 23513712 | 2L | 11848271..11848388 | 1006..1123 | 215 | 78.8 | Plus |
| 2R | 25286936 | 2R | 8453751..8453888 | 83..220 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:27:43 has no hits.
BS29118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:54 Download gff for
BS29118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14935-RD | 106..1800 | 17..1711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:00 Download gff for
BS29118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-B2-RA | 114..1808 | 17..1711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:45 Download gff for
BS29118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-B2-RA | 114..1808 | 17..1711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:45 Download gff for
BS29118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11850412..11851551 | 17..1156 | 99 | -> | Plus |
| 2L | 11851618..11851768 | 1157..1307 | 100 | -> | Plus |
| 2L | 11851827..11852022 | 1308..1503 | 100 | -> | Plus |
| 2L | 11852081..11852221 | 1504..1644 | 100 | -> | Plus |
| 2L | 11852378..11852444 | 1645..1711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:00 Download gff for
BS29118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11850412..11851551 | 17..1156 | 99 | -> | Plus |
| arm_2L | 11851618..11851768 | 1157..1307 | 100 | -> | Plus |
| arm_2L | 11851827..11852022 | 1308..1503 | 100 | -> | Plus |
| arm_2L | 11852081..11852221 | 1504..1644 | 100 | -> | Plus |
| arm_2L | 11852378..11852444 | 1645..1711 | 100 | | Plus |
BS29118.pep Sequence
Translation from 16 to 1710
> BS29118.pep
MAGLVKSDTEDFIDWWPHTVFYQIYPRSFKDSNGDGIGDLKGITSKLRYL
ADTGITATWLSPIFQSPMIDFGYDISDYKAIQPEYGTMQDFEELIDTAFE
LGIKVVLDFVPNHSSDQHEWFKKSAAREPGYEDFYVWHDGIVQENGTRVP
PNNWPSVFYGSAWEWHEGREQYYLHQFTKEQPDLNYRNPKVVQAMDDVLL
FWLNKGVAGFRIDAVNHLFEDESLKDEPLSGKTTDSLSYDYTKHIYSRDL
PEVLEMIHHWRQLLDDFSAKHPERPTRIMMTEAYAGLTQLADYYEDSNGV
RGSHLPFNFHFITDVKGDSDARDYVYNVEKWLIYMPRGHAANWVMGNHDN
PRVASRFGPASVDAMNMLLLTLPGVAVTYNGEELGMVDYRELSWEETVDP
PARNVGEKLYQEVSRDPVRTPFQWNNETNAGFSTAAKTWLPVHPNYLELN
LEAQKVANRSHYQVYKDLLELRKSAIMRVGRFNIEPLTRWVFAFKRSYPN
FESIITVINVSDKEQLVDLSEFLSQPKKLVVEVSGVDSKYQPGQSLAASA
LLLAAREGLVCRLV*
BS29118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-B2-PD | 564 | CG14935-PD | 1..564 | 1..564 | 3032 | 100 | Plus |
| Mal-B2-PC | 564 | CG14935-PC | 1..564 | 1..564 | 3032 | 100 | Plus |
| Mal-B2-PA | 564 | CG14935-PA | 1..564 | 1..564 | 3032 | 100 | Plus |
| Mal-B1-PA | 584 | CG14934-PA | 32..580 | 14..563 | 1945 | 62.7 | Plus |
| Mal-A5-PA | 630 | CG30359-PA | 42..592 | 13..560 | 1447 | 49.9 | Plus |
