BS29120.complete Sequence
986 bp assembled on 2012-04-25
GenBank Submission: KX805880
> BS29120.complete
GAAGTTATCAGTCGACATGAGAAGAATTGGTCTTTTAAATAGTTTAATGC
GCCAGAAAACGACTGCCAGAAACTTGTTTCAGTTCGGCAAAGTTAAGGGA
GATACTGGCAAATATGAACAGATCGTGTCCACCGGCCAAGTTTCCCCGGA
ACGTTTTGTGCCCGAGGAGATCAAGAAACCGGCGTACTACTTCAAGAATA
TGCCACCGGGTAACACGCTGGGATCGCCCGAAATCAAAAGCCAGGTTCAG
ATTGATGCCATGCGTCTAAGCGGCAGACTGGCGGCCAGGATACTGCGCGA
ATGCGGTAAACTAGCAACAGTTGGCACAACCACCGATCAGATTGATGCCT
TTGCGCATGAAAGAATTCTCGAGTCCAAAGCGTATCCGTCGCCGCTGAGA
TACGCCGGCTTCCCAAAGTCCATTTGCACGTCGATCAACAATATCGCCTG
TCACGGAATTCCGGATGACCGGCAGTTGGCCGATGGGGATATTATAAATA
TTGATGTCACAGTCTTTTTGAACGGCTACCATGGCGACTGTTCGGAAACA
TTTCGGGTGGGCAACGTGGACGAACGGGGTGGCTTTCTCGTGGAGGCCAC
TAAATCCTGTTTGGATCAGTGCATTTCGCTGTGCGGCCCCGGTGTGGAAT
TCAATGAGATTGGAAAGTTCATAGACAGATATTGCGACGAACATGATCTG
GCATCGATAGCTGCTTTCATTGGACATGGAATCGGTAGCTATTTCCACGG
CCCCCCGGAGATACTACACTATTATAATGAGATTCCTGGAAAGATGCAGC
CCGGCATGACCTTCACCATTGAACCCATTCTGTCCCTGGGCGGAGCAGAA
ATAGCAGTGCTGCAAGATGGCTGGACGGCCATTAGTTTGGATGGCGCACG
TAGCGCCCAGTTCGAGCACACCATTCTGATAACCGAGACGGGAACGGAGA
TACTTACAAGAGATCAATAGAAGCTTTCTAGACCAT
BS29120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5188-RA | 954 | CG5188-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5188-RA | 1050 | CG5188-RA | 20..975 | 17..972 | 4780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10428985..10429663 | 99..777 | 3380 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10429715..10429913 | 774..972 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 10428848..10428930 | 17..99 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:29:05 has no hits.
BS29120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:55 Download gff for
BS29120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 16..969 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:03 Download gff for
BS29120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 20..973 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:11 Download gff for
BS29120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 20..973 | 17..970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:11 Download gff for
BS29120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10428848..10428930 | 17..99 | 100 | -> | Plus |
| 2L | 10428986..10429659 | 100..773 | 100 | -> | Plus |
| 2L | 10429715..10429911 | 774..970 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:03 Download gff for
BS29120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10429715..10429911 | 774..970 | 100 | | Plus |
| arm_2L | 10428848..10428930 | 17..99 | 100 | -> | Plus |
| arm_2L | 10428986..10429659 | 100..773 | 100 | -> | Plus |
BS29120.pep Sequence
Translation from 16 to 969
> BS29120.pep
MRRIGLLNSLMRQKTTARNLFQFGKVKGDTGKYEQIVSTGQVSPERFVPE
EIKKPAYYFKNMPPGNTLGSPEIKSQVQIDAMRLSGRLAARILRECGKLA
TVGTTTDQIDAFAHERILESKAYPSPLRYAGFPKSICTSINNIACHGIPD
DRQLADGDIINIDVTVFLNGYHGDCSETFRVGNVDERGGFLVEATKSCLD
QCISLCGPGVEFNEIGKFIDRYCDEHDLASIAAFIGHGIGSYFHGPPEIL
HYYNEIPGKMQPGMTFTIEPILSLGGAEIAVLQDGWTAISLDGARSAQFE
HTILITETGTEILTRDQ*
BS29120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5188-PA | 317 | CG5188-PA | 1..317 | 1..317 | 1669 | 100 | Plus |
| CG13630-PA | 374 | CG13630-PA | 73..360 | 30..315 | 628 | 43.5 | Plus |
