BS29122.complete Sequence
1226 bp assembled on 2012-04-25
GenBank Submission: KX805239
> BS29122.complete
GAAGTTATCAGTCGACATGAACTACAATCCAAATCCGGGTATGCGGAACC
CCTCAGCTGCCGGTCGCCCAAGGCCGCCGAAGCGTGTGAGTGATGTTAAC
GCCATGGGACCCTCGGCTCCGATGATGGGCGGTGGCGCCACCTTCATGGC
CCCGCCCACCGGCCCCGGAATACTAGATCCCAATATGTACGGAGCACCTG
CTCCGGCCCCGGTCAACAGCTATGGCTTCGACCCCAATCTCGGCCAGCCC
TCGCAGCACATTCAGCAGCCACCACAACAGCAGCCCGGATACGGATATGG
AGCACCACCTCCCCAACAGGCGGCTGGGCCACCCACCTACGGAATAGGAG
CACCTCAGCCTGTAGCTCCACCCACTGGACAGTACCCACAGTTCGCCATG
TTCCAGCAGCCCATCGTGCAAGACATGGCTATGCAGTACGGTCAGAAACT
AGCGGATCAGGGCAAGCAGATCATGGAGAATCAGTTCGAGAAGTGGGTGC
CCGTAGCCAAGCTCAAGTACTACTTCGCAGTGGACAACGCCTACGTGGGC
AGGAAGTTGCGCCTTCTGTTTTTCCCCTATATGCATAAGGATTGGTCCCT
GCGCTACGACCAAGAGCACCCAGTGCAACCACGATATGATGTTAATGCGC
CAGATCTCTATCTGCCCACCATGGGCTACATCACATACGTGATCGTAGCG
GGTTTGCTTCTGGGCATGCAGAAGCGATTTTCGCCGGAGCAGCTCGGCAT
TCAGGCCTCCAGCGCCATGGCATATAGCATTTTCGAATTGGTCATTTACT
CCCTAGCCCTGTACGTAATGAATGTGAAGACGAGCCTGAAAACGCTTGAT
CTGCTGGCATTCACTGGTTATAAGTACGTTAATATAGTTGTCTGCCTGAT
GGTTAGCACGCTGTTCTTTAAGTCTGGATATTATATAGCACTGGCGTATA
CCAGTTTCTCCTTCGGTTTCTTCATGCTCCGCACGTTGCGGACGAAACTG
CTGCAGGACAACTCCCCGGCTGCGCCCAGTGGAGCCATCAACTACGATCC
GTATGGCAATCCACAGCAATTTGACTACAGCGGCGGGAAAAAGCGCAAAC
TCTACTTCCTGTTCATGATCGTCGCGGGACAGGCGCTGTTCGCCTTCCTG
CTCTCCAAGCACCTGTATCTGCCCGAGGCGGAGGTGCTGACGGTGCCCAA
GACCTTCTAAAAGCTTTCTAGACCAT
BS29122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RA | 1194 | CG5484-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| CG5484-RC | 1209 | CG5484-PC | 45..1209 | 46..1210 | 5810 | 99.9 | Plus |
| CG5484-RB | 1182 | CG5484-PB | 23..1182 | 51..1210 | 5800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RA | 1507 | CG5484-RA | 108..1301 | 17..1210 | 5970 | 100 | Plus |
| CG5484-RC | 1522 | CG5484-RC | 152..1316 | 46..1210 | 5810 | 99.9 | Plus |
| CG5484-RB | 1495 | CG5484-RB | 130..1289 | 51..1210 | 5800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26718328..26718867 | 51..590 | 2700 | 100 | Plus |
| 3R | 32079331 | 3R | 26718920..26719308 | 588..976 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 26719366..26719600 | 976..1210 | 1175 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:26:52 has no hits.
BS29122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:52 Download gff for
BS29122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RA | 131..1322 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:46 Download gff for
BS29122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RA | 108..1299 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:28 Download gff for
BS29122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RA | 108..1299 | 17..1208 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:28 Download gff for
BS29122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26717978..26718011 | 17..50 | 100 | -> | Plus |
| 3R | 26718328..26718866 | 51..589 | 100 | -> | Plus |
| 3R | 26718922..26719308 | 590..976 | 100 | -> | Plus |
| 3R | 26719367..26719598 | 977..1208 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:46 Download gff for
BS29122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22543700..22543733 | 17..50 | 100 | -> | Plus |
| arm_3R | 22544050..22544588 | 51..589 | 100 | -> | Plus |
| arm_3R | 22544644..22545030 | 590..976 | 100 | -> | Plus |
| arm_3R | 22545089..22545320 | 977..1208 | 100 | | Plus |
BS29122.pep Sequence
Translation from 16 to 1209
> BS29122.pep
MNYNPNPGMRNPSAAGRPRPPKRVSDVNAMGPSAPMMGGGATFMAPPTGP
GILDPNMYGAPAPAPVNSYGFDPNLGQPSQHIQQPPQQQPGYGYGAPPPQ
QAAGPPTYGIGAPQPVAPPTGQYPQFAMFQQPIVQDMAMQYGQKLADQGK
QIMENQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFFPYMHKDWSLRYDQE
HPVQPRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGIQASSA
MAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLMVSTLF
FKSGYYIALAYTSFSFGFFMLRTLRTKLLQDNSPAAPSGAINYDPYGNPQ
QFDYSGGKKRKLYFLFMIVAGQALFAFLLSKHLYLPEAEVLTVPKTF*
BS29122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-PA | 397 | CG5484-PA | 1..397 | 1..397 | 2118 | 100 | Plus |
| CG5484-PC | 402 | CG5484-PC | 1..402 | 1..397 | 2094 | 98.5 | Plus |
| CG5484-PB | 393 | CG5484-PB | 1..393 | 1..397 | 2074 | 98.7 | Plus |
