BS29124.complete Sequence
2048 bp assembled on 2012-06-11
GenBank Submission: KX801509
> BS29124.complete
GAAGTTATCAGTCGACATGAAGGAGTTCGACGATTTTAATTTTAGCGTTG
AGAAATATACCAAGGACCTGACACGAGAATGTGTGGGTGGCAGCGATTTG
CAGCAGCGAAAAAAGGAAATCGAGGCCTACAACGAAACGACGGCAGCAAC
GCTCAAGCAAACATGCAAAAAGAACTATATGGAGTTTATACAGACGGCCA
AGGAGATATCACATCTCGAGTCGGAAATGTATCAACTGTCGCACATTCTG
ATTGAGCAGCGCAATATTCTGGCCACCATGACGGATGGCAAGACTTCCAG
TCACCTGAAGGCAGAGAGTTTGGAGGCGGAGAGCACTACGGCGACGGAGG
ATCTGGAGAATAGCCATGCCACGCGGGCGGTCAAGGAAATGGTCCAGGGC
TTCAATGGCAATCTGGAAGGCAAGACCTTCCTCAACGAGGGAGCTCTAAT
CGAGTTGGACAGTAATGATTATCGACCCATTCAAAGGGTCTTCTTTTTCC
TCTTCAACGATGTACTGATTGTCTGCAAAGTGAAGCATGATAAGCGCTTG
GATTTCCTCACCGAGTACGACCCCAAGAAAATAGCCGTGATTAACATTAA
GGACTTGGATGGCGTTAAGAATGCCATTAATATCATTACTCCAGATGGTT
CCAAGATCTATCAAAGCATCACGGCTGCTGGGAAGACGGAGTGGATAGAG
AAGCTCGAAGAGGCCTTCCGCTTTGACCAGCAAAAGAAACCAAAAAAGGG
CCAGGCGCCACAGCCTCCAACTCGGGCCAAACAGCAGTCAAAAGCTTCGA
CTCCGGAGAAGGAAACCACACCCCAGAGTCCCGGACAGCCCAAATCCCTG
GAGGATGAGACGCCCGAGTGGCTAAGCACGGCCAGTGAAGAGATTCAGAC
CCTGGTGGCCCAACGGCATTTCGAGGATGCCCAGGAGCTGATAAAGCGAA
CCCAGGACTTCTTGCGAAACGAGAACCGAAAGAAGTTGCCGCTAGCGGAC
GCCATTGAAACCAAGGTGAAGCAGCAGGAGCTGAAGCTGATCAATGTGCT
GCTCAAGGAGTTGTCCAACAGTCACAATCGCAATCTGCAGATCGCTCTGA
GAGCAGCCAAGCGGCCTCTGAAGATTCTCGTAGAGATGGGTCGCTATCGG
CAGGCGAGTGCCACTCTGCTGAAGGTCTGCGCCGTCAGTTTGCGGGTGGC
GCAACGGGAGGCGCGCAGGAATAATGCGGATATATCGGAACTCTTCTTTT
GTGACCTGACGCAGGTGGCCTGTGATTTTCTCACCGCCTTTGAGAAGCAA
CCGGCGTGCGTTAGCGCGCTCGTGGTTTGGTGCAATGCGGAGCTGCAATA
TTTTGCCAGCCAACTGATAAAGCATTACCTGACCAAGGGAACCTCCCTGG
AGTCAGTGGCCAAATGTGTGGAGCGAGTGCGCAAGCCCTCGACAAAGCTC
ACAGAGATCGGGCTGGACATTAGTTATCATTTGGAAGGTCTGTTGCGCAC
TACACTCGAGTCGCTCATAGAGGAATCCAAGGAGCGACTGCTGGACTCCG
TGGGTCGCACCGAGGAGAGCTGGCAGCCGTACAATTTGCAGACCAAGTCG
AACCTGAAGCGTCTGCTCCTGGAGCTCGATGTCTTGGGTATCGATGTGCG
AGCCCAGGCGACGGGCGACACATGGATTAATCTCACCCAGTCGACAGTGG
TTTTCATCAGACACTTCCTGCAGCTCACCGAGTACTGCGGCTGTCTGGCC
AAGTGCGAAACCCTGCTGCAGAGCCTGGAACTGCTTCTTAAGGAGCTGTT
CATTGCCCAGCATTCGTTGAAACCGCCCAGCGACATGGCCGTGGATCCCA
ACTTTGTAATGAAGAACAAGATTTTTCTGGTGGACAACCTGCTGCCCATC
GCCATCGACAAGTTTCGACAGATTTCTGGACGCCAGTGCGAGGGATTGCG
CGAGTTGCACACGAAAATGTCCCGCCAGCAAGGTGCTCCAGTGCCGCGCC
AGCGCAGCGTCTACACCACAGATGTGTTTTAGAAGCTTTCTAGACCAT
BS29124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Exo84-RA | 2016 | CG6095-PA | 1..2016 | 17..2032 | 10065 | 100 | Plus |
| Exo84-RB | 2019 | CG6095-PB | 1..2019 | 17..2032 | 10000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Exo84-RA | 2243 | CG6095-RA | 28..2045 | 16..2033 | 10075 | 100 | Plus |
| Exo84-RB | 2246 | CG6095-RB | 28..2048 | 16..2033 | 10010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26050760..26051532 | 1316..544 | 3850 | 99.9 | Minus |
| 3R | 32079331 | 3R | 26050171..26050701 | 1846..1316 | 2655 | 100 | Minus |
| 3R | 32079331 | 3R | 26051586..26051917 | 544..213 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 26049929..26050115 | 2033..1847 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 26051974..26052129 | 212..57 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 26052190..26052230 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:33:08 has no hits.
BS29124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:48 Download gff for
BS29124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo84-RA | 29..2044 | 17..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:46 Download gff for
BS29124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo84-RA | 29..2044 | 17..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:32 Download gff for
BS29124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Exo84-RA | 29..2044 | 17..2032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:32 Download gff for
BS29124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26049930..26050115 | 1847..2032 | 100 | <- | Minus |
| 3R | 26050171..26050700 | 1317..1846 | 100 | <- | Minus |
| 3R | 26050760..26051532 | 544..1316 | 99 | <- | Minus |
| 3R | 26051587..26051917 | 213..543 | 100 | <- | Minus |
| 3R | 26051974..26052129 | 57..212 | 100 | <- | Minus |
| 3R | 26052190..26052229 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:46 Download gff for
BS29124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21875652..21875837 | 1847..2032 | 100 | <- | Minus |
| arm_3R | 21875893..21876422 | 1317..1846 | 100 | <- | Minus |
| arm_3R | 21876482..21877254 | 544..1316 | 99 | <- | Minus |
| arm_3R | 21877309..21877639 | 213..543 | 100 | <- | Minus |
| arm_3R | 21877696..21877851 | 57..212 | 100 | <- | Minus |
| arm_3R | 21877912..21877951 | 17..56 | 100 | | Minus |
BS29124.pep Sequence
Translation from 16 to 2031
> BS29124.pep
MKEFDDFNFSVEKYTKDLTRECVGGSDLQQRKKEIEAYNETTAATLKQTC
KKNYMEFIQTAKEISHLESEMYQLSHILIEQRNILATMTDGKTSSHLKAE
SLEAESTTATEDLENSHATRAVKEMVQGFNGNLEGKTFLNEGALIELDSN
DYRPIQRVFFFLFNDVLIVCKVKHDKRLDFLTEYDPKKIAVINIKDLDGV
KNAINIITPDGSKIYQSITAAGKTEWIEKLEEAFRFDQQKKPKKGQAPQP
PTRAKQQSKASTPEKETTPQSPGQPKSLEDETPEWLSTASEEIQTLVAQR
HFEDAQELIKRTQDFLRNENRKKLPLADAIETKVKQQELKLINVLLKELS
NSHNRNLQIALRAAKRPLKILVEMGRYRQASATLLKVCAVSLRVAQREAR
RNNADISELFFCDLTQVACDFLTAFEKQPACVSALVVWCNAELQYFASQL
IKHYLTKGTSLESVAKCVERVRKPSTKLTEIGLDISYHLEGLLRTTLESL
IEESKERLLDSVGRTEESWQPYNLQTKSNLKRLLLELDVLGIDVRAQATG
DTWINLTQSTVVFIRHFLQLTEYCGCLAKCETLLQSLELLLKELFIAQHS
LKPPSDMAVDPNFVMKNKIFLVDNLLPIAIDKFRQISGRQCEGLRELHTK
MSRQQGAPVPRQRSVYTTDVF*
BS29124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Exo84-PA | 671 | CG6095-PA | 1..671 | 1..671 | 3417 | 100 | Plus |
| Exo84-PB | 672 | CG6095-PB | 1..672 | 1..671 | 3398 | 99.7 | Plus |
