BS29125.complete Sequence
2450 bp assembled on 2012-07-26
GenBank Submission: KX801392
> BS29125.complete
GAAGTTATCAGTCGACATGTTTCTACGCCGCTGCACTCTACTGCTGCTGA
TCTGCCTAATTGCGAGTGACGCCGCCAGCGCCGCACGCAAAACAAAGCGT
CCCGTCAAGCCGGTCAAGCAGACCAATCCGCGCACCAATGTAACGCCTTC
GCCGCCGGCTGTCGCCTCATCGGGTAGTTCCACACCCGCCAGCACCAGCA
GCACCACCACCACGGAAGGAAGCGGCGACCAGGAGGTGGCCACAGTCGGA
TCTGCAGCTCTAGCCGGCGGCGGGGAACTGCCCAAGCCTCTGGTCACGCC
CATCGAGGCGCAGCCGGAGGCTAAGACGGACAAGGCACCAGCTCTGGAGG
AGGAGTGCGATCCAGATATGATTGGCTTTGAGATTATTACCGGCTACGTG
CTTTCGGCTCCCTCGAAAATGCTGGACACTCTGCCCGGCACGCTGATGCT
AACCGACTGCTTGGAGGCCTGCCAAAGTAACGAGTCCTGCAGCGCTGTCA
ACTACGAAACCGGATTGTGTGTGCTGTTCAAGACGACCGCCGATAAATTG
CCAGGTTCACTTTCGCGCTCGCAGTTTCCGGTTTTCACCATCTACGCACA
GAAATCGTGTTTGGGCGTGCGTCCTTGCTCGAAGGCCTGGTGCATCGATC
GCGTTCAAGGTTACCGCCTCCCGGAGCACGTCAAATCTAGTCAGACGGTT
CTGTCGCGGCGAGACTGCTTGGAACTCTGCTTGGGGGAGACCGAGTTCAC
ATGCCGATCGGCGAACTATTACCGCCATTCGGGACTTTGTGAACTCTCCG
ACATGGACCGCATAACCTTGTCTGCTGGAGGAAGCGTGGAACCCTACGAT
GGAGCTGACTACCTGGAGAACAACTGCGCAGAGGAGCCCAGCAAACTGTG
CGAGTTCAAGCGGATTTCGGGAAAGATCCTGAAGACAGTGGATTCGGTTT
ACCAGGACATCAACACCATCGACGAGTGCCGAGATCTCTGCCTTAACTCG
CCCTACAGATGCCACTCTTACGACTACAATGATACTGGAGACATGGTCTG
CCGATTGTCGCATCACAGCCGCGCCACCTTGACCGATGTGATGGATCCCT
ACTTGGATGTCCCCGAGGCAGCTACCTATGAACTGTCAGCCTGCTACAAT
GTATCCATAGAGTGCCGCTCCGGTGAGATGATCACCAAGATTAGAACGTC
CAAACTTTTCGATGGCAAGGTCTACGCCAAAGGAGCGCCCAAATCCTGCG
CTGTGAACGTGAACAACTCGCTGGAGTTTGACTTCCGCATGGGCTACAAT
GATCTGGAGTGCAATGTGCGCCAGAGCGCTTATGGCAGATATATGAACGA
CATAGTTATCCAACATCACGACATGATTGTCACCTCCTCCGATCTCGGCC
TCGCAGTATCCTGTCAGTATGATTTGACCAACAAAACAGTGCTGAATGAT
GTAGACCTTGGAGTAACTGGAGAGATTGAGTCCTCCCTGAGCGAAGAGAT
CACCATTGATTCGCCCAATGTGATCATGAAGATCACCTCTAGGGATGGCA
GCGACATGAAGAGGATGGCCGAGGTTGGGGATCCGCTTGCCCTGCGATTT
GAGATCGTGGAGCCCAACAGTCCGTACGAGATCTTCGTGAGGGAACTGGT
GGCCATGGATGGCTCGGACAGCGCCGAGATAACGCTGATCGATGCTAATG
GCTGCCCCACCGACCAATACATCATGGGCACCATCCAGAAGCTGGCGCAA
AATCGCAAGGTGCTGCTCTCCCAGTTCGACGCCTTCAAGTTTCCTTCGAG
CGAAGTGGTCCAGTTTCGTGCCTTGGTAACGCCCTGCATTCCGCGCTGCG
AACCCGTCATTTGCGACAGCGAGGATGGCGCCAGTGGAGAGCTCAAATCT
TTGGTTTCCTATGGCCGCAAGAAGAGGTCGGTGCTGAATGGAACTGATGG
GGCCGAGTTCTTGATCAGCACACGCCACCGTCGTGATGTGGGCCCAGTGG
ATGATAACATACTGCTCATGCAGTCCATACAAATCACAGACAAGTTCGGG
TTCCAGCCAGAGGATGGCACTACTACCCACGGAAATGACAGCGGTCCCCA
CGAGAAGGCCTATGCGGGCGTGGCCCAGGACAAGCTCACTTGCCTTAATG
GCTATGGACTTATCATGGCCGGAGCTCTATTCCTGTTGGCCCAATTGAGC
ATCTTCGGCATCTGGAAGACCGTGCAGCGCCGCACCAGCAAGGAGCGCTA
CCTGTACCAGCACGAGCCCACGCCCACCATCACCTACGGAGCGCCCACCA
TGCTGTACGGACCACCACCCAACTCCTCCGCTGGATCTTCGGCCTCGGGA
ACGTCCTACGGGGGCAGTGCCAAGGACACGCTGAGCAAACTTTACGACAG
CGGCATCAACGGGCGCTACGGACAGCAGTTCTAGAAGCTTTCTAGACCAT
BS29125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nyo-RD | 2418 | CG1499-PD | 1..2418 | 17..2434 | 12090 | 100 | Plus |
| nyo-RC | 2418 | CG1499-PC | 1..2418 | 17..2434 | 12090 | 100 | Plus |
| mey-RB | 2325 | CG12063-PB | 409..1931 | 350..1872 | 2830 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nyo-RD | 3681 | CG1499-RD | 487..2904 | 17..2434 | 12090 | 100 | Plus |
| nyo-RC | 3762 | CG1499-RC | 568..2985 | 17..2434 | 12090 | 100 | Plus |
| mey-RB | 3229 | CG12063-RB | 639..2161 | 350..1872 | 2830 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31560849..31561795 | 1006..1952 | 4735 | 100 | Plus |
| 3R | 32079331 | 3R | 31504079..31505108 | 843..1872 | 2150 | 80.6 | Plus |
| 3R | 32079331 | 3R | 31558132..31558508 | 17..393 | 1885 | 100 | Plus |
| 3R | 32079331 | 3R | 31565110..31565388 | 2156..2434 | 1395 | 100 | Plus |
| 3R | 32079331 | 3R | 31560533..31560785 | 756..1008 | 1265 | 100 | Plus |
| 3R | 32079331 | 3R | 31561946..31562151 | 1952..2157 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 31559999..31560203 | 552..756 | 1025 | 100 | Plus |
| 3R | 32079331 | 3R | 29823766..29824618 | 1006..1858 | 950 | 74.1 | Plus |
| 3R | 32079331 | 3R | 31559228..31559391 | 393..556 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 31503484..31503688 | 552..756 | 365 | 78.5 | Plus |
| 3R | 32079331 | 3R | 31502960..31503121 | 395..556 | 240 | 76.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:46:18 has no hits.
BS29125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 14:34:16 Download gff for
BS29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nyo-RD | 493..2904 | 23..2434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:02 Download gff for
BS29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nyo-RC | 574..2985 | 23..2434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:56 Download gff for
BS29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nyo-RC | 574..2985 | 23..2434 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:56 Download gff for
BS29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31560002..31560203 | 555..756 | 100 | -> | Plus |
| 3R | 31560534..31560785 | 757..1008 | 100 | -> | Plus |
| 3R | 31565111..31565388 | 2157..2434 | 100 | | Plus |
| 3R | 31558138..31558508 | 23..393 | 100 | -> | Plus |
| 3R | 31559229..31559389 | 394..554 | 100 | -> | Plus |
| 3R | 31560852..31561795 | 1009..1952 | 100 | -> | Plus |
| 3R | 31561947..31562150 | 1953..2156 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:02 Download gff for
BS29125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27385724..27385925 | 555..756 | 100 | -> | Plus |
| arm_3R | 27386256..27386507 | 757..1008 | 100 | -> | Plus |
| arm_3R | 27383860..27384230 | 23..393 | 100 | -> | Plus |
| arm_3R | 27384951..27385111 | 394..554 | 100 | -> | Plus |
| arm_3R | 27386574..27387517 | 1009..1952 | 100 | -> | Plus |
| arm_3R | 27387669..27387872 | 1953..2156 | 100 | -> | Plus |
| arm_3R | 27390833..27391110 | 2157..2434 | 100 | | Plus |
BS29125.pep Sequence
Translation from 16 to 2433
> BS29125.pep
MFLRRCTLLLLICLIASDAASAARKTKRPVKPVKQTNPRTNVTPSPPAVA
SSGSSTPASTSSTTTTEGSGDQEVATVGSAALAGGGELPKPLVTPIEAQP
EAKTDKAPALEEECDPDMIGFEIITGYVLSAPSKMLDTLPGTLMLTDCLE
ACQSNESCSAVNYETGLCVLFKTTADKLPGSLSRSQFPVFTIYAQKSCLG
VRPCSKAWCIDRVQGYRLPEHVKSSQTVLSRRDCLELCLGETEFTCRSAN
YYRHSGLCELSDMDRITLSAGGSVEPYDGADYLENNCAEEPSKLCEFKRI
SGKILKTVDSVYQDINTIDECRDLCLNSPYRCHSYDYNDTGDMVCRLSHH
SRATLTDVMDPYLDVPEAATYELSACYNVSIECRSGEMITKIRTSKLFDG
KVYAKGAPKSCAVNVNNSLEFDFRMGYNDLECNVRQSAYGRYMNDIVIQH
HDMIVTSSDLGLAVSCQYDLTNKTVLNDVDLGVTGEIESSLSEEITIDSP
NVIMKITSRDGSDMKRMAEVGDPLALRFEIVEPNSPYEIFVRELVAMDGS
DSAEITLIDANGCPTDQYIMGTIQKLAQNRKVLLSQFDAFKFPSSEVVQF
RALVTPCIPRCEPVICDSEDGASGELKSLVSYGRKKRSVLNGTDGAEFLI
STRHRRDVGPVDDNILLMQSIQITDKFGFQPEDGTTTHGNDSGPHEKAYA
GVAQDKLTCLNGYGLIMAGALFLLAQLSIFGIWKTVQRRTSKERYLYQHE
PTPTITYGAPTMLYGPPPNSSAGSSASGTSYGGSAKDTLSKLYDSGINGR
YGQQF*
BS29125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nyo-PD | 805 | CG1499-PD | 1..805 | 1..805 | 4209 | 100 | Plus |
| nyo-PC | 805 | CG1499-PC | 1..805 | 1..805 | 4209 | 100 | Plus |
| mey-PB | 774 | CG12063-PB | 17..774 | 9..744 | 2771 | 71.1 | Plus |
| mey-PA | 774 | CG12063-PA | 17..774 | 9..744 | 2771 | 71.1 | Plus |
| neo-PB | 744 | CG7802-PB | 29..742 | 39..749 | 2215 | 59.7 | Plus |
