BS29126.complete Sequence
2792 bp assembled on 2012-06-11
GenBank Submission: KX801624
> BS29126.complete
GAAGTTATCAGTCGACATGCACTTCAGTTGGCTGTCAGAGAAAGCGCCCA
CGCCGCCAGCCACCTGGGCCGATCACTCGTACTTCTTCCGTCCGCAATAC
TATAAGGTGACCGTATCCGAGCGCGATCACCCGGAACGGACGCACGTTTA
CTTCAATGAGACGATCATACCGGAGAACCAAGGACTAAATGGTTCAGATT
TTATGCCATTGAATTTCAAATCATCGTTTTCAATTGTAACACATCAAGCT
GAAGTCAGAATGCCTAGCGGTAAAGTAGACAAACCCGTGATCCAGGACAA
CCGTGATGGTACCGTCTCGGTGAAGTACGATCCCCGTGAGGAGGGATCCC
ACGAGCTGGTGGTCAAATACAACGGAGAACCCGTGCAAGGATCTCCCTTC
AAATTCCACGTTGACTCGATCACCTCCGGCTATGTGACTGCCTACGGACC
CGGCCTGACCCACGGAGTCACCGGTGAGCCGGCCAACTTTACCATCTCCA
CCAAGGGAGCCAGCGCCGGTGGCCTGACCATGGCCGTCGAAGGACCCAGC
AAGGCTGACATCAACTACCATGACAACAAAGACGGCACTGTATCTGTGCA
ATACCTGCCCACTGCTCCTGGCGAGTACCAGGTGTCCGTTCGCTTCGGCG
ATAAGCACATCAAGGGATCGCCGTACTTCGCCAAGATCACCGGCGAGGGT
CGCAAGCGCAACCAGATCTCGGTTGGCTCCTGCTCCGAAGTGACCATGCC
CGGCGACATTACCGATGACGATCTGCGCGCTTTGAACGCCTCGATCCAGG
CGCCCAGTGGCCTGGAGGAGCCCTGCTTCCTGAAGCGCATGCCCACTGGC
AACATTGGCATCTCGTTCACGCCCCGCGAGATTGGCGAGCATCTGGTGTC
GGTGAAGCGTCTGGGCAAGCACATCAACAACTCACCATTTAAGGTGACTG
TCTGCGAGCGCGAGGTGGGCGACGCCAAGAAGGTCAAGGTTAGCGGAACT
GGCCTCAAGGAGGGTCAAACCCATGCCGACAACATCTTCTCCGTGGACAC
GAGGAACGCCGGCTTCGGTGGTCTTTCGGTCTCCATTGAGGGTCCCAGCA
AGGCTGAGATCCAGTGCACGGATAAGGATGACGGTACTCTCAACATCTCG
TACAAGCCCACTGAGCCGGGCTACTACATTGTTAACCTGAAGTTCGCCGA
TCACCACGTGGAGGGTTCTCCTTTCACCGTCAAGGTTGCCGGCGAGGGCA
GCAACCGCAAGCGCGAGAAGATCCAGCGGGAGCGCGATGCTGTTCCAATC
ACGGAAATCGGAAGCCAGTGCAAGCTGACATTCAAGATGCCGGGCATTAC
CTCGTTCGATCTGGCCGCCTGTGTCACCTCGCCTAGCAACGTGACCGAGG
ATGCGGAGATCCAAGAGGTGGAGGATGGCCTCTACGCAGTGCACTTTGTG
CCCAAGGAGTTGGGCGTGCACACGGTGTCGGTGCGCTATTCCGAGATGCA
CATACCCGGATCACCGTTCCAGTTCACCGTGGGACCACTGCGCGACTCCG
GCAGCCATCTTGTTAAGGCTGGAGGCTCTGGTCTGGAGCGAGGTGTTGTC
GGAGAGGCGGCCGAGTTCAATGTGTGGACCCGCGAGGCAGGCGGTGGTTC
CCTGGCCATTTCCGTGGAAGGTCCCAGCAAGGCTGACATCGAGTTTAAGG
ACCGCAAGGACGGCAGCTGCGATGTGTCGTACAAGGTCACCGAACCGGGA
GAGTACCGCGTGGGCCTGAAATTCAACGATCGCCACATACCCGACTCACC
ATTCAAGGTGTACGTCTCCCCGGATGCGGGTGATGCCCACAAGCTGGAGG
TTCAGCAGTTCCCGCAGGGTAACATCCAGGCGGACGCTCCCTACCAATTC
ATGGTCCGCAAGAACGGTGCCAAGGGTGAGCTGGATGCCAAGATTGTGGC
TCCATCCGGAACGGACGATGATTGCTTCATCCAGGTGATCGACGGCGAGA
TGTACTCGGTGCGATTCTATCCACGCGAGAACGGAATCCATGCCATCCAC
GTCAAGTTCAACGGCGTCCACATACCCGACTCTCCATTCAGGATCAAGGT
GGGCAAGGATGTGGCCGATCCAGCTGCCGTGCACGCCAGCGGCAATGGAT
TGGACGAAGTGAAGACTGGACACAAGGCCGACTTCATCATCAACACCTGC
AACGCCGGCGTTGGCACGTTGGCCGTCTCCATCGATGGACCCTCCAAGGT
GGCCATGGACTGCACAGAGGTTGAGGAGGGCTACAAGGTCCGCTACACCC
CGCTCCTGCCCGGCGAGCACTACATCACGGTCAAGTACAACAACATGCAC
ATCGTGGGCTCGCCATTCAAGGTGAACGCTACCGGCGACAAGTTAGCGGA
TGAGGGCGCCCAGGAGACGTCCACGGTGATCGTGGAGACCGTGCAGAAGG
TGGCCAAAGGAGGCAAGAACACGGGCGTCCATCTGCCCACCTTTAAGTCG
GATGCCAGCAAGGTGGTGTCCAAGGGTATGGGCCTGAAGAAGGCCTACAT
TGGCAAGCAGAACCAGTTCAGCATCAGCGCCACCGATGCGGGCAACAACA
TCCTGTACGTGGGCATGTACGGACCAAAGGGACCCTGCGAGGAGTTCCAC
GTGAAGCACGCTGGCCACAACAACTATAATGTGCAGTATCTGGTGCGCGA
TCGCGGCCAGTACGTGCTCCTAATCAAGTGGGGCGAGGAGCATATACCCG
GCTCCCCATTCCAGATCGATGTGTAGAAGCTTTCTAGACCAT
BS29126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cher-RF | 2760 | CG3937-PF | 1..2760 | 17..2776 | 13800 | 100 | Plus |
| cher-RH | 2574 | CG3937-PH | 1..2574 | 203..2776 | 12870 | 100 | Plus |
| cher-RN | 7215 | CG3937-PN | 4686..7215 | 247..2776 | 12650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cher-RF | 3602 | CG3937-RF | 336..3095 | 17..2776 | 13800 | 100 | Plus |
| cher-RH | 3502 | CG3937-RH | 247..2995 | 28..2776 | 13745 | 100 | Plus |
| cher-RN | 8392 | CG3937-RN | 5356..7885 | 247..2776 | 12650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17092286..17094318 | 2592..560 | 10165 | 100 | Minus |
| 3R | 32079331 | 3R | 17098038..17098269 | 248..17 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 17092040..17092225 | 2776..2591 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 17094376..17094547 | 559..388 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 17094608..17094751 | 390..247 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:33:12 has no hits.
BS29126.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:48 Download gff for
BS29126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cher-RF | 336..3095 | 17..2776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:47 Download gff for
BS29126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cher-RF | 336..3095 | 17..2776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:35 Download gff for
BS29126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cher-RF | 336..3095 | 17..2776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:35 Download gff for
BS29126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17092040..17092224 | 2592..2776 | 100 | <- | Minus |
| 3R | 17092287..17094318 | 560..2591 | 100 | <- | Minus |
| 3R | 17094376..17094545 | 390..559 | 100 | <- | Minus |
| 3R | 17094609..17094749 | 249..389 | 100 | <- | Minus |
| 3R | 17098038..17098269 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:47 Download gff for
BS29126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12917762..12917946 | 2592..2776 | 100 | <- | Minus |
| arm_3R | 12918009..12920040 | 560..2591 | 100 | <- | Minus |
| arm_3R | 12920098..12920267 | 390..559 | 100 | <- | Minus |
| arm_3R | 12920331..12920471 | 249..389 | 100 | <- | Minus |
| arm_3R | 12923760..12923991 | 17..248 | 100 | | Minus |
BS29126.pep Sequence
Translation from 16 to 2775
> BS29126.pep
MHFSWLSEKAPTPPATWADHSYFFRPQYYKVTVSERDHPERTHVYFNETI
IPENQGLNGSDFMPLNFKSSFSIVTHQAEVRMPSGKVDKPVIQDNRDGTV
SVKYDPREEGSHELVVKYNGEPVQGSPFKFHVDSITSGYVTAYGPGLTHG
VTGEPANFTISTKGASAGGLTMAVEGPSKADINYHDNKDGTVSVQYLPTA
PGEYQVSVRFGDKHIKGSPYFAKITGEGRKRNQISVGSCSEVTMPGDITD
DDLRALNASIQAPSGLEEPCFLKRMPTGNIGISFTPREIGEHLVSVKRLG
KHINNSPFKVTVCEREVGDAKKVKVSGTGLKEGQTHADNIFSVDTRNAGF
GGLSVSIEGPSKAEIQCTDKDDGTLNISYKPTEPGYYIVNLKFADHHVEG
SPFTVKVAGEGSNRKREKIQRERDAVPITEIGSQCKLTFKMPGITSFDLA
ACVTSPSNVTEDAEIQEVEDGLYAVHFVPKELGVHTVSVRYSEMHIPGSP
FQFTVGPLRDSGSHLVKAGGSGLERGVVGEAAEFNVWTREAGGGSLAISV
EGPSKADIEFKDRKDGSCDVSYKVTEPGEYRVGLKFNDRHIPDSPFKVYV
SPDAGDAHKLEVQQFPQGNIQADAPYQFMVRKNGAKGELDAKIVAPSGTD
DDCFIQVIDGEMYSVRFYPRENGIHAIHVKFNGVHIPDSPFRIKVGKDVA
DPAAVHASGNGLDEVKTGHKADFIINTCNAGVGTLAVSIDGPSKVAMDCT
EVEEGYKVRYTPLLPGEHYITVKYNNMHIVGSPFKVNATGDKLADEGAQE
TSTVIVETVQKVAKGGKNTGVHLPTFKSDASKVVSKGMGLKKAYIGKQNQ
FSISATDAGNNILYVGMYGPKGPCEEFHVKHAGHNNYNVQYLVRDRGQYV
LLIKWGEEHIPGSPFQIDV*
BS29126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cher-PF | 919 | CG3937-PF | 1..919 | 1..919 | 4869 | 100 | Plus |
| cher-PH | 857 | CG3937-PH | 1..857 | 63..919 | 4517 | 100 | Plus |
| cher-PN | 2404 | CG3937-PN | 1563..2404 | 78..919 | 4440 | 100 | Plus |
| cher-PM | 2429 | CG3937-PM | 1588..2429 | 78..919 | 4440 | 100 | Plus |
| cher-PL | 2399 | CG3937-PL | 1558..2399 | 78..919 | 4440 | 100 | Plus |
| cher-PN | 2404 | CG3937-PN | 492..1315 | 77..919 | 905 | 31.7 | Plus |
| cher-PM | 2429 | CG3937-PM | 517..1340 | 77..919 | 905 | 31.7 | Plus |
| cher-PN | 2404 | CG3937-PN | 854..1705 | 64..915 | 837 | 28.8 | Plus |
| cher-PM | 2429 | CG3937-PM | 879..1730 | 64..915 | 837 | 28.8 | Plus |
| cher-PN | 2404 | CG3937-PN | 982..1892 | 93..919 | 665 | 25.3 | Plus |
| cher-PM | 2429 | CG3937-PM | 1007..1917 | 93..919 | 665 | 25.3 | Plus |
| cher-PN | 2404 | CG3937-PN | 239..1018 | 119..916 | 600 | 27 | Plus |
| cher-PM | 2429 | CG3937-PM | 287..1043 | 140..916 | 593 | 27 | Plus |
| cher-PN | 2404 | CG3937-PN | 297..1123 | 79..919 | 562 | 24.7 | Plus |
| cher-PM | 2429 | CG3937-PM | 322..1148 | 79..919 | 562 | 24.7 | Plus |
| cher-PM | 2429 | CG3937-PM | 269..853 | 305..911 | 402 | 26.5 | Plus |
