BS29134.complete Sequence
2885 bp assembled on 2012-07-30
GenBank Submission: KX805871
> BS29134.complete
GAAGTTATCAGTCGACATGGACACGAGTGGCGGAAATTTGGATTCCCTAG
ACGACACGGAACCATTGCCGGAGCTGAGTTTTGAAGACTTTTTGGAGCCA
ACGTCGGAGAAGAGTTCCCAGCACATGGAAATCGAAGCTCTGGACTCAGA
GGAAGACAATATCGGCGGTGAAGATCTGGCCGATCCGGCCAACGATTCCC
TGAACACGCCGCAGTTTAAGAAGAACGTGGTCCACATACTGGAGGACAAG
AGGTTAAACTCGTCCGGACTAACCGTTTTGAAGTCGCACGCCATTAAGAT
GGTGACTGCCGGAGGTACTCCTCCGGCCAAGGCGCAAGTTACAGACGTAA
AGATACTAAACAAATTGAAACCAATACCCAGCAGTACGCTAAAGATCGGT
AGCACGACCATAGCGACCAAATCCACACCGGGCAGCATAACCAAGACTTT
GGGCAACTTGACCCAGATTAGGACGAAAGATGGCCAAGTCATCTTTGTCC
AGAAGTCTGTTCCTGGAACACAAAGCAGCACTGCGGTGACAGGGTCACCA
AGCGGTGGAATAAGACGCCTCGTGGCGCCTTCTGGTATCCAGAAGGCAGT
GCTTTCTAAGGGCGTGACCATGGCAAGCACGGGTCTGGTCAAGGCGGCTG
TTCCTGCCAAAGCAAGCACCTCGGTACCCGGCTCAGCCATAACCTTAAAG
GGCATCCAACCGCTGGCCGGAGGCACTGCGAAGGCGTCGACTTCCAGCAC
GACGGCAACCACATCCCCATCTTTGGCACAGCCCAACAAAATTCAGGTGG
TGCGCACTGCCGATGGCAAAATTATCAAGATCAATCAGGCTGGTCCCTCA
CTGCTGGTGAACGCCAAACAGGGAACTGGGACCACAGTCACACCAGGAGG
TTCTGCCGCCACTTCTGTCAAACTATCTCCCTCCACGGGAAATGTGGTGC
TCAACAAGCCCGTTGGCCAGGTAGTGGTGAGAACAGAAACTCCTGTAAAA
ACGGCGACGGGCTCCGTTGCCAGTGCATCCGCAACACCGGGCAAGATGTT
GGTTCAAAGTGGCGGCAAACAGATTCTTGTATCCAACAAGAACATCATTA
AGCTGTCGCCGAATGCGAGTGCCACCAGTTCGACAACCCACACGACGGGC
GGACAGACACCTTCCACCTCGAGCGGATTGCACGCTATTCAGCTGCCTGG
CAAGGGAGGAATACAATATGTACGTGTCCTGAACAACAATAAGAGTGCCG
CCGGAACAAGTGCAACAGCCTCAATCCCGAAAACAGTGCAAACTCAGAAG
ATCACTGTGGTGCGGCCACCGGCTGCTACTGGTGTTCCTGCCACATCTAC
TACAACATCCGCAGCAGCAGCTTCACCTGCAGCCGCATCGAAGGCAAACC
TTGCCATGGGCAACACTAACAAGATTGTAATGCGATCAATGGGTGGCAGC
ATTGTGCCGCTGCCTTCCGTGCAGACGTTGGTCTCAAAGCGTGCGCTGGG
CGCCATCTCCAACGCTTCAAAACCAGCCAGTGCGGCGAGCAGCAGCGCCA
CGCCGAGTGCCAGCCAGGAGTTGCCACGCAAACACCGTCTTACTGATCTC
AATGTGCAGCTAAAGCAATCGGCCTCGGTCAGCAGTGAAGCTAGCGACAG
CAGCGATGCGGGTCCTGAGGCCAAAAAGCCGCGTTACGTTATTACCATGC
AGCAAGGATCACAGAAGGCAGCTTCCCAGCCAGTTCAGAAACTAATTAAT
CGGACAGCGAATGTACAGCGTGTGGTGTCTAGCAGTACAAGTCCCAGTTC
CAACTCCACAAAGAAAATCTACAACTATGTTCAACCGACTGGAAGCAATG
GGGCCAAGTACATGATCTGTAACTCGGGTGTGCCCCAATCATCGACGAGT
GCCATGCGACGGGGATACACTGGATATGTGGAAAACAAGACGCGACGCCC
GCCACCCATTTCCCCGCAACAGCACCGCTTTAAGCAGATGGGTCCCCAGC
AGCAGTCCAAGCACCAGCAACTTCAAGCGCAGGCCAAGCAACGGATTAGA
CAGCAGCAACTGCCTACCGAACAATCGACGCCGATCAAGGTCGAGCCAAA
GTTGCCGACACTGCCTCCGGGGGTGAAGGCCAATGTACCTGCCAAGCCGC
TCTTTGAAGTCCTAAAACCTCCAGCAACCGCGGCAGCAGCCGGAGCCGTC
GATCCATTGGGCGGCATGACTTCGCGGCGAAAGCACTGCAACTGCAGCAA
GTCGCAGTGTCTAAAGCTTTACTGCGATTGCTTTGCAAACGGCGAGTTTT
GTCAGGACTGCACCTGCAAGGATTGCTTTAACAATCTGGACTACGAAGTG
GAGCGGGAGCGTGCTATTCGCAGCTGCCTCGATCGTAACCCCAGCGCCTT
TAAACCCAAAATTACGGCACCCAATTCAGGTGATATGCGTCTGCATAACA
AAGGTTGCAACTGCAAAAGATCGGGCTGCCTCAAGAACTATTGTGAGTGC
TATGAGGCAAAGATTCCCTGCTCCAGCATATGTAAATGCGTTGGGTGTCG
AAACATGGAAGACCGTCCGGACGTGGACATGGACTCTCTGGACGGATTGA
TGGGTGTCGAGGGTCAGAAAAAGGACAAAGCTAAAAACAAGCAATTGAAC
GAGAATCGCGCAAATATATATTTTACGGACGATGTCATTGAGGCGACCAT
CATGTGCATGATATCGCGGATTGTGATGCACGAGAAACAGAATGTGGCCG
TGGAGGACATGGAGCGCGAGGTTATGGAGGAAATGGGCGAAAGTCTGACA
CAGATCATCGCTTTTGCCAAGGAAAAGCAAGAAACCTCTCAGATAGACGA
GTCCAAGCCTTCTTCTTAGAAGCTTTCTAGACCAT
BS29134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip120-RA | 2853 | CG6061-PA | 1..2853 | 17..2869 | 14265 | 100 | Plus |
| mip120-RB | 2859 | CG6061-PB | 31..2859 | 41..2869 | 14145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip120-RA | 3475 | CG6061-RA | 339..3192 | 16..2869 | 14270 | 100 | Plus |
| mip120-RB | 3221 | CG6061-RB | 110..2938 | 41..2869 | 14145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13509788..13511236 | 41..1489 | 7245 | 100 | Plus |
| 2R | 25286936 | 2R | 13511291..13512208 | 1486..2403 | 4590 | 100 | Plus |
| 2R | 25286936 | 2R | 13512503..13512829 | 2543..2869 | 1635 | 100 | Plus |
| 2R | 25286936 | 2R | 13512297..13512437 | 2404..2544 | 705 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2387 | 1338..1397 | 147 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2518 | 1344..1424 | 141 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2376 | 1338..1389 | 125 | 71.2 | Plus |
BS29134.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:07 Download gff for
BS29134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip120-RA | 328..3180 | 17..2869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:12 Download gff for
BS29134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip120-RA | 340..3192 | 17..2869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:44 Download gff for
BS29134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip120-RA | 340..3192 | 17..2869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:44 Download gff for
BS29134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13506769..13506793 | 17..41 | 100 | -> | Plus |
| 2R | 13509789..13511236 | 42..1489 | 100 | -> | Plus |
| 2R | 13511295..13512208 | 1490..2403 | 100 | -> | Plus |
| 2R | 13512297..13512436 | 2404..2543 | 100 | -> | Plus |
| 2R | 13512504..13512829 | 2544..2869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:12 Download gff for
BS29134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9394274..9394298 | 17..41 | 100 | -> | Plus |
| arm_2R | 9397294..9398741 | 42..1489 | 100 | -> | Plus |
| arm_2R | 9398800..9399713 | 1490..2403 | 100 | -> | Plus |
| arm_2R | 9399802..9399941 | 2404..2543 | 100 | -> | Plus |
| arm_2R | 9400009..9400334 | 2544..2869 | 100 | | Plus |
BS29134.pep Sequence
Translation from 16 to 2868
> BS29134.pep
MDTSGGNLDSLDDTEPLPELSFEDFLEPTSEKSSQHMEIEALDSEEDNIG
GEDLADPANDSLNTPQFKKNVVHILEDKRLNSSGLTVLKSHAIKMVTAGG
TPPAKAQVTDVKILNKLKPIPSSTLKIGSTTIATKSTPGSITKTLGNLTQ
IRTKDGQVIFVQKSVPGTQSSTAVTGSPSGGIRRLVAPSGIQKAVLSKGV
TMASTGLVKAAVPAKASTSVPGSAITLKGIQPLAGGTAKASTSSTTATTS
PSLAQPNKIQVVRTADGKIIKINQAGPSLLVNAKQGTGTTVTPGGSAATS
VKLSPSTGNVVLNKPVGQVVVRTETPVKTATGSVASASATPGKMLVQSGG
KQILVSNKNIIKLSPNASATSSTTHTTGGQTPSTSSGLHAIQLPGKGGIQ
YVRVLNNNKSAAGTSATASIPKTVQTQKITVVRPPAATGVPATSTTTSAA
AASPAAASKANLAMGNTNKIVMRSMGGSIVPLPSVQTLVSKRALGAISNA
SKPASAASSSATPSASQELPRKHRLTDLNVQLKQSASVSSEASDSSDAGP
EAKKPRYVITMQQGSQKAASQPVQKLINRTANVQRVVSSSTSPSSNSTKK
IYNYVQPTGSNGAKYMICNSGVPQSSTSAMRRGYTGYVENKTRRPPPISP
QQHRFKQMGPQQQSKHQQLQAQAKQRIRQQQLPTEQSTPIKVEPKLPTLP
PGVKANVPAKPLFEVLKPPATAAAAGAVDPLGGMTSRRKHCNCSKSQCLK
LYCDCFANGEFCQDCTCKDCFNNLDYEVERERAIRSCLDRNPSAFKPKIT
APNSGDMRLHNKGCNCKRSGCLKNYCECYEAKIPCSSICKCVGCRNMEDR
PDVDMDSLDGLMGVEGQKKDKAKNKQLNENRANIYFTDDVIEATIMCMIS
RIVMHEKQNVAVEDMEREVMEEMGESLTQIIAFAKEKQETSQIDESKPSS
*
BS29134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip120-PA | 950 | CG6061-PA | 1..950 | 1..950 | 4813 | 100 | Plus |
| mip120-PB | 952 | CG6061-PB | 11..952 | 9..950 | 4771 | 100 | Plus |
| Alh-PF | 1165 | CG1070-PF | 131..646 | 216..724 | 171 | 21.3 | Plus |
| Mur2B-PB | 1144 | CG14796-PB | 480..933 | 121..601 | 170 | 19.5 | Plus |
| tomb-PA | 243 | CG14016-PA | 26..72 | 812..858 | 167 | 57.4 | Plus |
