BS29136.complete Sequence
665 bp assembled on 2012-04-25
GenBank Submission: KX806399
> BS29136.complete
GAAGTTATCAGTCGACATGTCGGTGGCCGGGCTTCGACAATGTCTGCTGC
TGTGGAGCGTCGACTACTGGAACTTGGAAGTCATGGCGGACAATGTCTTC
AAGTCGCACGATATCGGGCTGCGGGCGCAGAAGAAGATCCTCTCACGCAT
GGCCACAAAAAACATCGCCAAGACCTTCATCGATGGCACGACGGCGTCGC
TGCTGGACAACCTCTACAGGCTCTGCAAGATGCACACGGGGAACAAGGCC
AAGGCGGAGAAGCTGATCAAGAACATCATCAAGATTGTGATCAAGATCGG
TGTGCTCCACCGGAACAATCAGTTCAGCGACGAGGAGCTGCAGAAGGCGG
AGCTCTTTAAGAGAAAGTTTCAAAACACGCAGCTGTCCATCATATCATTC
TACGAAGTGGACTTCACGTTCGACCTGCCGTACCTGCAAAAGTCAATAGC
CGAATCGCAAGTGGCGCTGAAGTCGATTGTGCAGCCGCATCTCACAGAAA
AGTCGCTGGGCCGCATCGACGAGGTGTTCGATTTCTTCGGCGAGGAGGCG
CTGCTGGAGACGGCTTTCCGACCAGATTCCCCCTACCGCGAGGTGATGGG
AAAGATTGTGGCGGACATAAACGCAGCCATGGAAACGGGAGATATCTGAA
AGCTTTCTAGACCAT
BS29136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4091-RC | 633 | CG4091-PC | 1..633 | 17..649 | 3165 | 100 | Plus |
| CG4091-RB | 567 | CG4091-PB | 1..567 | 83..649 | 2835 | 100 | Plus |
| CG4091-RA | 567 | CG4091-PA | 1..567 | 83..649 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4091-RC | 1950 | CG4091-RC | 294..934 | 9..649 | 3175 | 99.7 | Plus |
| CG4091-RB | 1857 | CG4091-RB | 271..841 | 79..649 | 2855 | 100 | Plus |
| CG4091-RA | 1881 | CG4091-RA | 295..865 | 79..649 | 2855 | 100 | Plus |
| CG4091-RB | 1857 | CG4091-RB | 1..62 | 19..80 | 310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23700298..23700592 | 373..79 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 23699965..23700247 | 649..367 | 1385 | 99.3 | Minus |
| 2R | 25286936 | 2R | 23700801..23700871 | 80..10 | 325 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:29:40 has no hits.
BS29136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:56 Download gff for
BS29136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RC | 297..928 | 17..648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:11 Download gff for
BS29136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RC | 302..933 | 17..648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:23 Download gff for
BS29136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RC | 302..933 | 17..648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:23 Download gff for
BS29136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23700298..23700590 | 81..373 | 100 | <- | Minus |
| 2R | 23700801..23700864 | 17..80 | 100 | | Minus |
| 2R | 23699966..23700240 | 374..648 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:11 Download gff for
BS29136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19587489..19587763 | 374..648 | 100 | <- | Minus |
| arm_2R | 19587821..19588113 | 81..373 | 100 | <- | Minus |
| arm_2R | 19588324..19588387 | 17..80 | 100 | | Minus |
BS29136.pep Sequence
Translation from 16 to 648
> BS29136.pep
MSVAGLRQCLLLWSVDYWNLEVMADNVFKSHDIGLRAQKKILSRMATKNI
AKTFIDGTTASLLDNLYRLCKMHTGNKAKAEKLIKNIIKIVIKIGVLHRN
NQFSDEELQKAELFKRKFQNTQLSIISFYEVDFTFDLPYLQKSIAESQVA
LKSIVQPHLTEKSLGRIDEVFDFFGEEALLETAFRPDSPYREVMGKIVAD
INAAMETGDI*
BS29136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4091-PC | 210 | CG4091-PC | 1..210 | 1..210 | 1062 | 100 | Plus |
| CG4091-PB | 188 | CG4091-PB | 1..188 | 23..210 | 942 | 100 | Plus |
| CG4091-PA | 188 | CG4091-PA | 1..188 | 23..210 | 942 | 100 | Plus |
