Clone BS29138 Report

Search the DGRC for BS29138

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:291
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptPka-R1-RW
Protein status:BS29138.pep: full length peptide match
Sequenced Size:1001

Clone Sequence Records

BS29138.complete Sequence

1001 bp assembled on 2012-04-25

GenBank Submission: KX803904

> BS29138.complete
GAAGTTATCAGTCGACATGCCTAAGGAACAAGTCAAACTGGATGCCAGTA
GACAGGTAATCAGCCCCGACGACTGCGAAGATCTCAGCCCGATGCCACAA
ACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCGAACCCGT
AACCGAAGAGGATGCCACCAACTATGTTAAGAAGGTGGTGCCCAAGGACT
ACAAGACGATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGTCCTGTTC
GCTCACTTGGACGAGAGCGAGAGATCCGACATATTTGATGCCATGTTCCC
TGTGAATCACATCGCCGGCGAGAATATCATCCAGCAGGGCGATGAAGGCG
ACAACTTCTACGTGATTGATGTGGGAGAGGTCGATGTTTTCGTCAACTCC
GAACTAGTGACCACCATCAGCGAGGGCGGCAGCTTTGGTGAACTGGCCCT
CATCTATGGCACTCCTCGCGCCGCCACCGTGCGCGCCAAAACCGATGTGA
AGCTGTGGGGAATCGACCGCGACTCCTACCGCCGCATTCTGATGGGCTCG
ACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTTATCGCGCGTGTCCAT
TCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAGTGGCCGATTCCCTGG
AGACGTGCTCCTTCGATGACGGTGAGACGATTGTCAAGCAGGGAGCAGCT
GGCGATGACTTCTACATCATCCTCGAGGGCTGTGCGGTGGTGCTGCAGCA
GCGTTCTGAGCAGGGCGAGGATCCCGCCGAGGTGGGCCGTCTGGGTAGCA
GCGATTACTTTGGCGAGATTGCTCTGCTTTTGGACCGACCACGTGCAGCG
ACTGTTGTAGCTCGTGGGCCGCTCAAATGCGTCAAACTGGACCGGGCGAG
ATTTGAACGCGTGTTGGGACCCTGCGCCGACATACTCAAACGCAACATCA
CGCAATACAACAGTTTCGTATCGTTGTCCGTTTAAAAGCTTTCTAGACCA
T

BS29138.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RW 969 CG42341-PW 1..969 17..985 4845 100 Plus
Pka-R1-RAC 1134 CG42341-PAC 174..1134 25..985 4805 100 Plus
Pka-R1-RAB 1134 CG42341-PAB 174..1134 25..985 4805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RW 2426 CG42341-RW 264..1232 17..985 4845 100 Plus
Pka-R1-RAC 3243 CG42341-RC 321..1281 25..985 4805 100 Plus
Pka-R1-RAB 3580 CG42341-RB 658..1618 25..985 4805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20833283..20833657 386..760 1875 100 Plus
3L 28110227 3L 20832844..20833207 24..387 1820 100 Plus
3L 28110227 3L 20833728..20833869 759..900 710 100 Plus
3L 28110227 3L 20834000..20834086 899..985 435 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:30:22 has no hits.

BS29138.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:58 Download gff for BS29138.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RW 264..1230 17..983 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:23 Download gff for BS29138.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RW 264..1230 17..983 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:38 Download gff for BS29138.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RW 264..1230 17..983 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:38 Download gff for BS29138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20832839..20833205 17..385 98 -> Plus
3L 20833283..20833657 386..760 100 -> Plus
3L 20833730..20833869 761..900 100 -> Plus
3L 20834002..20834084 901..983 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:23 Download gff for BS29138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20827102..20827184 901..983 100   Plus
arm_3L 20825939..20826305 17..385 98 -> Plus
arm_3L 20826383..20826757 386..760 100 -> Plus
arm_3L 20826830..20826969 761..900 100 -> Plus

BS29138.pep Sequence

Translation from 16 to 984

> BS29138.pep
MPKEQVKLDASRQVISPDDCEDLSPMPQTAAPPVRRRGGISAEPVTEEDA
TNYVKKVVPKDYKTMNALSKAIAKNVLFAHLDESERSDIFDAMFPVNHIA
GENIIQQGDEGDNFYVIDVGEVDVFVNSELVTTISEGGSFGELALIYGTP
RAATVRAKTDVKLWGIDRDSYRRILMGSTIRKRKMYEEFLSRVSILESLD
KWERLTVADSLETCSFDDGETIVKQGAAGDDFYIILEGCAVVLQQRSEQG
EDPAEVGRLGSSDYFGEIALLLDRPRAATVVARGPLKCVKLDRARFERVL
GPCADILKRNITQYNSFVSLSV*

BS29138.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-PW 322 CG42341-PW 1..322 1..322 1640 100 Plus
Pka-R1-PAC 377 CG42341-PAC 56..377 1..322 1626 99.1 Plus
Pka-R1-PAB 377 CG42341-PAB 56..377 1..322 1626 99.1 Plus
Pka-R1-PZ 320 CG42341-PZ 2..320 4..322 1623 100 Plus
Pka-R1-PQ 321 CG42341-PQ 1..321 1..322 1623 99.7 Plus