BS29144.complete Sequence
1619 bp assembled on 2012-05-15
GenBank Submission: KX802315
> BS29144.complete
GAAGTTATCAGTCGACATGCCGACCATCCGGCGGTGCTGCATCATCGGAT
GCTTGTCCAATTCGCGTCAGCACCCGAGTATGCAGTTCTTTGCGTTTCCC
CGGCCGGAGAACCCCTTCCACAAGCTGTGGAAGGAGGCGTGCCACGCCTC
CCTAAGACGAATTGTGCCCTTCAAAAAGCCAGTGGTATGTGCCCTGCACT
TTGACCCCAGTGTCTTGGGTGGCAGGCGACTGCAGTCGAATGCGCTGCCC
ACCCTGCGTCTGGAAGTTCCCTCCAACCTGGAGGCCGTTGAGCAGCAGGC
CATGGTGGAGGAGATCGAGAGGAGCCGAAAGTGCGCCTACATCAATGCAG
TGGTATACGAATGGCTAGTAAGGGCCAATATCAATCCCCAGCTGCGAGGT
AGCATTACCCACGGAATGATCAAGGACAAGGCGGAGAATGCCAGACAAGT
CATAGGGAGCACATCCTTTATAGCAGACAATCGCTGGTTAAACCGTTTCC
GAGAGACTCATCTTCAAGGCTTTGCCCAAAAACTAGCCAGCAACCAGTTG
AAGCCACTAGGATCCTCCCTGTGGATCCCGGACATCGTACAGGACCTAGC
CCATCTCTTTCCGCCCGCGAGCGCTGAAAGAGTGGCCAAACTGGAGGAGA
TGCCCGAGCAGTACATGACCTACATGCAACAGTACGGAGAATACGAAGAA
GATGATGACAGTATGGATGTAAAGGAGCAGAGCTATCAAGAGCAACAGCA
GCAGCAACAGCAGCACTTTGCCCTCCAGCAGCAACATATGCAACAGCAGC
AGCATCAAATGGGCCACCCATGGCCACCGTTTCCAGGACATCCCGGACAT
CCTACTCCACACCCCGGGTTCGCCAGCTTCAACGACTTTTATTTCGAGCG
GCATCAACAGCAAATGCAACAGCAACTCCAGCAGCAGCAGCAGATGCAAC
AGTTTCCACCCACTATGCCACCTCAAAGGGAACCCTTTCAGCCCCAATTG
CCGCCAAATGTTCCACCGCAGCGGGCCAGTCCCTTCCAGCCCGTTCAGTT
GGCCAAGAGACCCAAAATGGAGTCACCCGATGATGACGAAGTGCAAGAGA
TTAACTCAGCGGTGAACTCACCACCATATCCGCTAGCAGAATCAACCTTA
ACCAGCAAGCACAGTCGAAGTTCCAGTCCCAACGAGCAGAACAACAATAA
TAGCGGGGGAAGAGACAGTGCCAGCAGCAAGGAGAACGCCCCCAAGGGAG
GCGGAACAAGTGGCAAATCCACGCCTGCCCTTTCTTCCAAGGGAAAGGAC
TCACCTGCACCAGCTCGAGCTGCGTCCACCAAACCCGCCTCTGCTCCCGC
CTCGCCAAAAAAGATCCCCAATGGATCCAGCTCCTCCGGCAGCCAAACCA
ATGGACACACATCCCCAGACCCCGAGGATAAGAAGGCTTTATGCATGCTG
AAGGAGTTGGAAAGCTACCACCAGGCCTTGGAGTACCTAAAACCGCTGGA
GGACTTCGTGCTCTTCAAGGAGAACTTTCGGGCTATTGGCTTGCTGTCCC
AATTGGAACTGGTGCTCCGAAAAGGGGACAAGGCCACACTGGTCGAGGGT
TAAAAGCTTTCTAGACCAT
BS29144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13894-RA | 1587 | CG13894-PA | 1..1587 | 17..1603 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13894-RA | 2193 | CG13894-RA | 401..2003 | 11..1613 | 7970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 693273..694875 | 1613..11 | 7970 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:58:03 has no hits.
BS29144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:54 Download gff for
BS29144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13894-RA | 406..1990 | 17..1601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:18 Download gff for
BS29144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13894-RA | 407..1991 | 17..1601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:09 Download gff for
BS29144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13894-RA | 407..1991 | 17..1601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:09 Download gff for
BS29144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 693285..694869 | 17..1601 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:18 Download gff for
BS29144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 693285..694869 | 17..1601 | 100 | | Minus |
BS29144.pep Sequence
Translation from 16 to 1602
> BS29144.pep
MPTIRRCCIIGCLSNSRQHPSMQFFAFPRPENPFHKLWKEACHASLRRIV
PFKKPVVCALHFDPSVLGGRRLQSNALPTLRLEVPSNLEAVEQQAMVEEI
ERSRKCAYINAVVYEWLVRANINPQLRGSITHGMIKDKAENARQVIGSTS
FIADNRWLNRFRETHLQGFAQKLASNQLKPLGSSLWIPDIVQDLAHLFPP
ASAERVAKLEEMPEQYMTYMQQYGEYEEDDDSMDVKEQSYQEQQQQQQQH
FALQQQHMQQQQHQMGHPWPPFPGHPGHPTPHPGFASFNDFYFERHQQQM
QQQLQQQQQMQQFPPTMPPQREPFQPQLPPNVPPQRASPFQPVQLAKRPK
MESPDDDEVQEINSAVNSPPYPLAESTLTSKHSRSSSPNEQNNNNSGGRD
SASSKENAPKGGGTSGKSTPALSSKGKDSPAPARAASTKPASAPASPKKI
PNGSSSSGSQTNGHTSPDPEDKKALCMLKELESYHQALEYLKPLEDFVLF
KENFRAIGLLSQLELVLRKGDKATLVEG*
BS29144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13894-PA | 528 | CG13894-PA | 1..528 | 1..528 | 2806 | 100 | Plus |
| fs(1)h-PB | 2038 | CG2252-PB | 1515..1764 | 214..458 | 170 | 26.5 | Plus |
| fs(1)h-PG | 2046 | CG2252-PG | 1523..1772 | 214..458 | 170 | 26.5 | Plus |
| upSET-PB | 3146 | CG9007-PB | 1491..1827 | 163..495 | 164 | 24.2 | Plus |
| upSET-PA | 3146 | CG9007-PA | 1491..1827 | 163..495 | 164 | 24.2 | Plus |
