BS29146.complete Sequence
2483 bp assembled on 2012-05-15
GenBank Submission: KX803035
> BS29146.complete
GAAGTTATCAGTCGACATGTCCGCCGTGAGCCCCAACTCTTGTGTGGAGA
CGCCCAAGGCGCCGGAATGGCTATCGAAGCTGGAGAGTCGTCGGGAGCAA
CTGAAACGCTCCAAGCTGGGTCACGAAGCCGGAGCTGGAGCCCCCTGTGC
CGAGTGCAAGGACAAATGTCCGGGGCTGGACTTGCACTTCTGGCGCAAGG
TTTGCCGCAACTGCAAGTGCCCCAAGATTCAGCATGTGTGTCCGGACGAC
GATGATGCCACTGGCTGGGCGCAGTTCGAGATTCTGGGCCAGATTAGGGC
CAAACCGGCGTATATCAAAATCAAAGCTCTGGCCAGTCAGCCCGTTCAGC
TGGAGTGGGTGCCGCCAAATGCTGCTCCGGATGTGGTCACAGATTATATG
GAGAAACTGGGCACCGCCCAAATACCTGTGGCTGGAAGCGATGCCGCGCT
CAAGCGGAAAATGCAACTCGAGTTGCAAGTGCCGCCACACGACCTGGATG
CCGCACTGTGCGATGGATTGACGGAAACGGAGGCCATCCAGCTGCAGCAA
TACGTTCAGAAATTGCGAGAGCAATGCGTCGGACAGGGCGTTGTTGTGCG
CCTTGGAGATCGTCTTAATCACGCCCAAGTGGAGCACGTAGCTCCTGCCT
TGATGCCAACCCAGGAGGCGCAACAGACCTGGCAATCATTGGGCCTCATG
CCCGTTGCGGATGACACTTTGAACGAACTGCTTGCCAATCCCAAGGTGGC
CCAGGCTTTGGCAAGTCCTGCGAGTGCCCATCCCAAACTACTGGTTGCGT
TTTCAGAGCCTCTATGCGAATCAACAGCCCAATTCGAGGAAAACGGAGCT
TTGCGAGCCCAAACTAGAGAAAAGCTGTTGGGGATTAGCAAACCGGCTCT
GCTTAGCCTTGTGACTCATGGTATTGTCTATGACAAGGTTCTGGGAATAT
TACAGGAAAAGAAGCTTAACATCTCGAGGGATCCAAAGCTTGGTCCCATT
GCTGAATTTCGCAAGGAGTATGTGAACAATCCGCAATTCAGAGCCGAGAT
CAACACCATCTGTCCTCAGCCGCCCATGACACCTATAAAATCACCTCCTG
GTACACCATTCAATTCTCCATTGCCGTTGAAAAACCCAGTGCAGATCAGA
ATGGGAGCACAGATGCGCCAGGATACGCCTATGCGAAGGGTCAAGTTTGG
TGGGGTCTCCACCATAGTTTATGACTGCGGACTGCCTGCCAATACGGACT
ATGATCGTGATCCTGTCTTTGCGCAAATTCTTCAGGCGGAACCGCTTAAA
CATGCATTCCAGGAAGCGCGTGCTGGACGTGCTCCCTCCTCGGTGGTTAT
CTCCAACATCCCAGCTCCAGTGGCCAGTCTTGCGGAGCTTAGGGGTCTAA
ACCCAGCCACCAGGGCTCAACTTCAATCCGTGGGACTTGACAAGAACATG
CTGCAGTCCGCCGTTTCCAACGCTCCATATTATGATCGCCTGTTCCGCTC
GCTCCATGACAAGGGCATCTCGCATGACCAATGCCATTTGCTGCAGCCAA
TGAAACAAGTGCACGACTGGCTGCTCGATGACGATCAGTTGCTGGATGAG
ATCGACAAGGTCTTTGCCGACATGGCTAATGGCTGCAAGGATATTTCCTA
CCCAAAACCCAGCCTTGGCGAGCTGCCCACATCGCAGAGCAGTGATTCTG
GCTTCCACTCAAAGCCACCGACACCGGGTTACGGCAGCGAGGATCTTACC
GCTGGGCAGGGCAGATTCGCCAGCATTCCGGGCATTGAGGACATGAACAT
GTACCCAAGTTGCGCCGGCATGCCGGAACAGTTCCAACAGCTACGACTTC
ACGGGGATGAGGCTTCTGGCAAGAATTCCACTCGCACTATTTTGTGCGCC
GACTGCAACCAACCGATCGCCATGGGCGAAGTTGCCGTTAAGGCAGATCG
TGCAGGAAAGGAGATAGCCTGGCATCCTGGCTGCTTCAAGTGCATCACGT
GCCGGGAACTCTTGGCCGACCTGGTCTACTTCTTCCATCAAGGACAAGTT
TTTTGCGGTCGCGATTTGGCCATCAGGCTGAAAATCCCGCGCTGCCGTGC
CTGCGATGAGCTGATCTTTACCAAGGAGTACACAGCCGCGGAGGAAGCAA
CGTTCCACATCAAGCACTTCTGCTGCTATCAGTGCGATGAGCCGCTGGCC
GGTCAGCAGTATATAGCGGATGAGAAGTCCAACATGCCCCTGTGCCTGCT
GTGCTATGACCGCTTATTTGCCGTCCGCTGTCAGCGCTGCAAAGTAGCGA
TTGGACCCGCAGATCAGGGCGTCGCTTGGGGCGATGTCCACTGGCATGCC
AGTTGCTTTGTTTGCGCTGGAGTCCAGTGCTCCAAGCCGCTAATAGGAGG
ACGCTTTTGCGTCAAGGAGAACATGCCCTTTTGCAGTCCCACCTGCGTGC
GCAGCTTGATTAATTAAAAGCTTTCTAGACCAT
BS29146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tes-RA | 2451 | CG6522-PA | 1..2451 | 17..2467 | 12255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tes-RA | 3102 | CG6522-RA | 107..2561 | 13..2467 | 12260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17467075..17467996 | 1874..953 | 4610 | 100 | Minus |
| 2R | 25286936 | 2R | 17468058..17468702 | 956..312 | 3225 | 100 | Minus |
| 2R | 25286936 | 2R | 17466420..17467012 | 2467..1875 | 2965 | 100 | Minus |
| 2R | 25286936 | 2R | 17468773..17469071 | 311..13 | 1480 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:57:46 has no hits.
BS29146.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:53 Download gff for
BS29146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6522-RA | 110..2558 | 17..2465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:14 Download gff for
BS29146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tes-RA | 111..2559 | 17..2465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:02 Download gff for
BS29146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tes-RA | 111..2559 | 17..2465 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:02 Download gff for
BS29146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17466422..17467012 | 1875..2465 | 100 | <- | Minus |
| 2R | 17467075..17467993 | 956..1874 | 100 | <- | Minus |
| 2R | 17468059..17468702 | 312..955 | 100 | <- | Minus |
| 2R | 17468773..17469067 | 17..311 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:14 Download gff for
BS29146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13353927..13354517 | 1875..2465 | 100 | <- | Minus |
| arm_2R | 13354580..13355498 | 956..1874 | 100 | <- | Minus |
| arm_2R | 13355564..13356207 | 312..955 | 100 | <- | Minus |
| arm_2R | 13356278..13356572 | 17..311 | 100 | | Minus |
BS29146.pep Sequence
Translation from 16 to 2466
> BS29146.pep
MSAVSPNSCVETPKAPEWLSKLESRREQLKRSKLGHEAGAGAPCAECKDK
CPGLDLHFWRKVCRNCKCPKIQHVCPDDDDATGWAQFEILGQIRAKPAYI
KIKALASQPVQLEWVPPNAAPDVVTDYMEKLGTAQIPVAGSDAALKRKMQ
LELQVPPHDLDAALCDGLTETEAIQLQQYVQKLREQCVGQGVVVRLGDRL
NHAQVEHVAPALMPTQEAQQTWQSLGLMPVADDTLNELLANPKVAQALAS
PASAHPKLLVAFSEPLCESTAQFEENGALRAQTREKLLGISKPALLSLVT
HGIVYDKVLGILQEKKLNISRDPKLGPIAEFRKEYVNNPQFRAEINTICP
QPPMTPIKSPPGTPFNSPLPLKNPVQIRMGAQMRQDTPMRRVKFGGVSTI
VYDCGLPANTDYDRDPVFAQILQAEPLKHAFQEARAGRAPSSVVISNIPA
PVASLAELRGLNPATRAQLQSVGLDKNMLQSAVSNAPYYDRLFRSLHDKG
ISHDQCHLLQPMKQVHDWLLDDDQLLDEIDKVFADMANGCKDISYPKPSL
GELPTSQSSDSGFHSKPPTPGYGSEDLTAGQGRFASIPGIEDMNMYPSCA
GMPEQFQQLRLHGDEASGKNSTRTILCADCNQPIAMGEVAVKADRAGKEI
AWHPGCFKCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRACDELI
FTKEYTAAEEATFHIKHFCCYQCDEPLAGQQYIADEKSNMPLCLLCYDRL
FAVRCQRCKVAIGPADQGVAWGDVHWHASCFVCAGVQCSKPLIGGRFCVK
ENMPFCSPTCVRSLIN*
BS29146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tes-PA | 816 | CG6522-PA | 1..816 | 1..816 | 4368 | 100 | Plus |
| esn-PA | 785 | CG43722-PA | 228..424 | 615..810 | 437 | 43.3 | Plus |
| esn-PB | 785 | CG43722-PB | 228..424 | 615..810 | 437 | 43.3 | Plus |
| Lmpt-PN | 529 | CG42679-PN | 163..337 | 627..806 | 429 | 42.8 | Plus |
| Lmpt-PD | 558 | CG32171-PD | 192..366 | 627..806 | 429 | 42.8 | Plus |
| Lmpt-PN | 529 | CG42679-PN | 370..525 | 652..812 | 197 | 29.9 | Plus |
