BS29161.complete Sequence
3512 bp assembled on 2013-01-23
GenBank Submission: KX806499
> BS29161.complete
GAAGTTATCAGTCGACATGGTCACCGAAAATGGAGCACAGGGCGATGGAA
ACACTTCCTTCCTGCGTGCCGCTCGCGCCGGAAATCTGGAGCGAGTGCTC
GAGCATTTGAAGAACAACATTGACATTAACACCAGCAATGCGAATGGCTT
GAATGCCCTGCACCTGGCCTCCAAGGATGGCCACATCCACGTCGTCTCGG
AACTCCTTCGTAGGGGCGCGATTGTGGATAGTGCCACCAAAAAGGGAAAC
ACTGCCCTCCACATCGCCTCATTGGCTGGACAGGAGGAGGTGGTGAAGCT
ACTGCTGGAGCACAATGCCTCCGTAAATGTGCAATCCCAGAATGGATTCA
CTCCACTCTACATGGCTGCCCAGGAGAACCACGATGCTGTGGTGCGTCTC
CTTTTGTCCAACGGAGCCAACCAGAGTCTGGCCACCGAGGATGGCTTCAC
CCCACTGGCGGTGGCCATGCAGCAGGGTCATGACAAAGTCGTTGCTGTCC
TCCTCGAGAGTGATACTCGTGGAAAGGTCAGGCTTCCTGCGCTGCACATT
GCCGCCAAAAAGGACGACGTCAAGGCAGCGACTCTGCTTCTCGATAATGA
CCATAATCCGGACGTGACTTCCAAGTCGGGCTTCACCCCGCTGCACATTG
CTTCCCATTATGGTAACCAAAACATCGCCAACCTACTCATCCAGAAGGGC
GCCGATGTCAACTACTCGGCCAAGCACAACATCAGTCCGCTGCATGTGGC
TGCTAAGTGGGGTAAGACCAACATGGTTTCCCTGCTTTTGGAAAAAGGTG
GTAACATCGAGGCAAAGACCCGGGACGGACTTACTCCGCTCCATTGCGCC
GCTCGCTCGGGTCATGAGCAAGTTGTTGACATGCTACTCGAACGAGGAGC
TCCCATCTCTGCCAAGACCAAAAATGGTTTGGCACCCCTCCATATGGCCG
CCCAGGGTGAGCATGTTGATGCCGCCCGCATCCTCTTGTACCATCGTGCT
CCCGTCGACGAGGTGACAGTGGATTATCTCACTGCTCTTCATGTGGCTGC
TCACTGTGGTCATGTTAGGGTGGCTAAGCTTTTACTAGATCGGAATGCTG
ATGCCAATGCAAGGGCTTTGAATGGATTCACTCCACTGCACATTGCCTGC
AAGAAGAACCGCTTGAAGGTGGTAGAGTTGCTCTTGCGACATGGTGCCAG
CATTAGTGCCACGACAGAGAGTGGACTTACTCCGCTCCATGTGGCCGCCT
TTATGGGTTGCATGAACATTGTCATCTATCTGCTGCAGCACGATGCCAGT
CCCGATGTGCCCACTGTGCGCGGAGAAACGCCACTCCATTTGGCCGCCAG
AGCCAACCAGACCGACATCATTCGAATCCTGCTGCGCAATGGCGCCCAGG
TGGACGCTCGTGCCCGAGAGCAACAGACACCGCTGCACATCGCTTCGCGA
CTGGGTAATGTAGACATCGTGATGCTTCTGCTGCAACATGGCGCCCAAGT
GGACGCAACCACCAAGGACATGTACACGGCACTTCACATCGCTGCCAAGG
AGGGCCAGGATGAGGTGGCCGCTGTACTAATTGAGAACGGCGCCGCCTTG
GATGCCGCCACCAAGAAGGGATTCACTCCACTTCACTTGACGGCCAAATA
TGGACACATTAAGGTTGCCCAGTTGTTGCTCCAAAAGGAGGCAGATGTGG
ATGCGCAGGGCAAGAACGGTGTCACCCCGTTGCATGTGGCTTGCCACTAC
AATAACCAGCAGGTTGCCCTGTTGCTTCTGGAGAAGGGAGCAAGTCCACA
TGCCACGGCTAAGAATGGACATACCCCGCTCCATATTGCCGCAAGGAAGA
ACCAGATGGACATAGCTACTACTCTATTGGAATATGGCGCTTTGGCCAAT
GCCGAGAGCAAAGCCGGATTTACTCCACTCCATTTGAGCAGCCAGGAGGG
TCATGCCGAGATCTCCAATCTGTTGATCGAGCACAAGGCCGCCGTCAATC
ATCCGGCTAAGAATGGTCTAACTCCCATGCATCTGTGTGCCCAGGAGGAT
AATGTGAATGTGGCTGAGATTCTGGAGAAGAACGGCGCCAATATCGACAT
GGCCACCAAGGCAGGCTACACTCCTTTGCATGTGGCCTCACATTTTGGGC
AGGCCAACATGGTGCGTTTCTTGCTGCAGAATGGCGCCAATGTGGATGCG
GCCACCTCAATTGGCTATACTCCGCTCCATCAGACCGCCCAGCAGGGTCA
TTGTCATATTGTGAATCTCCTGCTGGAGCACAAGGCTAATGCCAACGCTC
AGACGGTCAATGGACAGACGCCTTTGCACATTGCCCGCAAACTGGGCTAC
ATAAGTGTCCTAGACTCGTTGAAAACCATCACCAAGGAGGACGAAACAGC
TGCTGCTCCTTCCCAAGCCGAGGAGAAGTATCGCGTGGTGGCTCCCGAGG
CCATGCACGAATCCTTCATGTCCGACTCCGAGGAAGAGGGCGGCGAAGAC
AATATGCTATCAGATCAACCATACCGCTATTTGACCGTTGATGAAATGAA
ATCCCTAGGCGACGACTCGCTGCCCATCGATGTGACCCGTGATGAGCGCA
TGGACTCCAACCGGATGACCCAGAGCGCCGAGTATGCCTCTGGTGTTCCG
CCCACCATTGGGGAGGAGGTGATCAGTCCCCACAAGACCCAAGTCTACGG
CAGTTCACCCAAGGCCACCGTGGATGGAGTGTACATTGCCAATGGATCTG
GTCACGATGAGCCGCCGCATGTGGGTCGCAAGTTAAGCTGGAAGAGCTTC
TTGGTGTCCTTCCTGGTGGATGCCCGTGGAGGAGCAATGCGCGGCTGTCG
GCACAGTGGCGTTCGCATGATCATCCCTTCGAGGTCCACTTGTCAGCCAA
CCAGGGTAACCTGTCGTTATGTGAAGCCGCAGCGCACAATGCATCCGCCC
CAGTTGATGGAGGGCGAGGCTTTGGCCAGTCGTGTCCTGGAACTGGGTCC
TTGCTCCACCAAGTTTATTGGGCCAGTGGTCATGGAGGTGCCACACTTTG
CATCGCTGCGTGGCAAGGAGCGCGAGATCATAATACTGCGATCGGACAAT
GGAGAAACATGGCGGGAGCACACCATCGATAACTCCGAGGAGATCATACA
CGATGTCCTGCAGCAGTGCTTTGAACCAGAGGAGATTGCCCAACTGGAGG
AGCAGGCTGGCAACCATGTCTGCCGCTTTGTCACCTACGACTTCCCTCAG
TACTTTGCCGTCGTATCGCGCATACGCCAGGAGGTCCATGCCATTGGACC
GGAGGGCGGCATGGTGTCAAGCACCGTGGTGCCACAGGTGCAGGCCGTCT
TCCCACAGGGAGCCCTCACCAAGAAGATCAAAGTTGGCTTACAGGTAAAC
CTCTTTAAACCGCGCAAGGGCGTCGCGCCTGAGAAATTGCGCAAAATAAG
CGTCAATCATGTGCCCAAGAAGAAGCGCTTCTCGCTCATTTGGTAAAAGC
TTTCTAGACCAT
BS29161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank2-RN | 3480 | CG42734-PN | 1..3480 | 17..3496 | 17400 | 100 | Plus |
| Ank2-RW | 3930 | CG42734-PW | 474..3930 | 40..3496 | 17285 | 100 | Plus |
| Ank2-RU | 40680 | CG42734-PU | 1..3379 | 17..3395 | 16895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank2-RN | 4752 | CG42734-RN | 490..3970 | 17..3497 | 17405 | 100 | Plus |
| Ank2-RW | 5268 | CG42734-RW | 1029..4486 | 40..3497 | 17290 | 100 | Plus |
| Ank2-RU | 42128 | CG42734-RU | 490..3868 | 17..3395 | 16895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7707888..7708818 | 2493..1563 | 4655 | 100 | Minus |
| 3L | 28110227 | 3L | 7709519..7710283 | 1360..596 | 3825 | 100 | Minus |
| 3L | 28110227 | 3L | 7710349..7710802 | 595..142 | 2270 | 100 | Minus |
| 3L | 28110227 | 3L | 7705973..7706380 | 3182..2775 | 2040 | 100 | Minus |
| 3L | 28110227 | 3L | 7705600..7705915 | 3497..3182 | 1580 | 100 | Minus |
| 3L | 28110227 | 3L | 7706461..7706744 | 2775..2492 | 1420 | 100 | Minus |
| 3L | 28110227 | 3L | 7709145..7709354 | 1566..1357 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 7710868..7710971 | 142..39 | 520 | 100 | Minus |
| 4 | 1348131 | 4 | 122410..122567 | 1155..998 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:12:55 has no hits.
BS29161.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-23 09:16:02 Download gff for
BS29161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RN | 490..3967 | 17..3494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:05 Download gff for
BS29161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RN | 490..3967 | 17..3494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:30 Download gff for
BS29161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RN | 490..3967 | 17..3494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:30 Download gff for
BS29161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7705603..7705914 | 3183..3494 | 100 | <- | Minus |
| 3L | 7705973..7706379 | 2776..3182 | 100 | <- | Minus |
| 3L | 7706461..7706743 | 2493..2775 | 100 | <- | Minus |
| 3L | 7707889..7708816 | 1565..2492 | 100 | <- | Minus |
| 3L | 7709147..7709350 | 1361..1564 | 100 | <- | Minus |
| 3L | 7709519..7710283 | 596..1360 | 100 | <- | Minus |
| 3L | 7710349..7710801 | 143..595 | 100 | <- | Minus |
| 3L | 7710868..7710969 | 41..142 | 100 | <- | Minus |
| 3L | 7713138..7713161 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:05 Download gff for
BS29161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7698703..7699014 | 3183..3494 | 100 | <- | Minus |
| arm_3L | 7699073..7699479 | 2776..3182 | 100 | <- | Minus |
| arm_3L | 7699561..7699843 | 2493..2775 | 100 | <- | Minus |
| arm_3L | 7700989..7701916 | 1565..2492 | 100 | <- | Minus |
| arm_3L | 7702247..7702450 | 1361..1564 | 100 | <- | Minus |
| arm_3L | 7702619..7703383 | 596..1360 | 100 | <- | Minus |
| arm_3L | 7703449..7703901 | 143..595 | 100 | <- | Minus |
| arm_3L | 7703968..7704069 | 41..142 | 100 | <- | Minus |
| arm_3L | 7706238..7706261 | 17..40 | 100 | | Minus |
BS29161.pep Sequence
Translation from 16 to 3495
> BS29161.pep
MVTENGAQGDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHL
ASKDGHIHVVSELLRRGAIVDSATKKGNTALHIASLAGQEEVVKLLLEHN
ASVNVQSQNGFTPLYMAAQENHDAVVRLLLSNGANQSLATEDGFTPLAVA
MQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAATLLLDNDHNPDV
TSKSGFTPLHIASHYGNQNIANLLIQKGADVNYSAKHNISPLHVAAKWGK
TNMVSLLLEKGGNIEAKTRDGLTPLHCAARSGHEQVVDMLLERGAPISAK
TKNGLAPLHMAAQGEHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHV
RVAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGASISATT
ESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTD
IIRILLRNGAQVDARAREQQTPLHIASRLGNVDIVMLLLQHGAQVDATTK
DMYTALHIAAKEGQDEVAAVLIENGAALDAATKKGFTPLHLTAKYGHIKV
AQLLLQKEADVDAQGKNGVTPLHVACHYNNQQVALLLLEKGASPHATAKN
GHTPLHIAARKNQMDIATTLLEYGALANAESKAGFTPLHLSSQEGHAEIS
NLLIEHKAAVNHPAKNGLTPMHLCAQEDNVNVAEILEKNGANIDMATKAG
YTPLHVASHFGQANMVRFLLQNGANVDAATSIGYTPLHQTAQQGHCHIVN
LLLEHKANANAQTVNGQTPLHIARKLGYISVLDSLKTITKEDETAAAPSQ
AEEKYRVVAPEAMHESFMSDSEEEGGEDNMLSDQPYRYLTVDEMKSLGDD
SLPIDVTRDERMDSNRMTQSAEYASGVPPTIGEEVISPHKTQVYGSSPKA
TVDGVYIANGSGHDEPPHVGRKLSWKSFLVSFLVDARGGAMRGCRHSGVR
MIIPSRSTCQPTRVTCRYVKPQRTMHPPQLMEGEALASRVLELGPCSTKF
IGPVVMEVPHFASLRGKEREIIILRSDNGETWREHTIDNSEEIIHDVLQQ
CFEPEEIAQLEEQAGNHVCRFVTYDFPQYFAVVSRIRQEVHAIGPEGGMV
SSTVVPQVQAVFPQGALTKKIKVGLQVNLFKPRKGVAPEKLRKISVNHVP
KKKRFSLIW*
BS29161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank2-PN | 1159 | CG34416-PN | 1..1159 | 1..1159 | 5959 | 100 | Plus |
| Ank2-PW | 1309 | CG42734-PW | 153..1309 | 3..1159 | 5921 | 99.6 | Plus |
| Ank2-PU | 13559 | CG42734-PU | 1..1132 | 1..1132 | 5788 | 99.6 | Plus |
| Ank2-PT | 4223 | CG34416-PT | 1..1132 | 1..1132 | 5788 | 99.6 | Plus |
| Ank2-PM | 2404 | CG34416-PM | 1..1132 | 1..1132 | 5788 | 99.6 | Plus |
| Ank2-PW | 1309 | CG42734-PW | 135..309 | 608..782 | 239 | 32 | Plus |
