BS29163.complete Sequence
3206 bp assembled on 2012-06-11
GenBank Submission: KX805502
> BS29163.complete
GAAGTTATCAGTCGACATGAATACCCAATCGAAGGTGTACCGTACCGGCG
AAGAAATCTATGACAACTTGCCATGCGATAGTTATTTCAACATGAATGCC
ATTCGCAACCTGGGAATCCCAACAACGTTTCCGACCATTGGAACATTTAC
ACTTGACTCTACTACGTTGGGACTGCAGCCGCAGGGTCAGGGCCCGTCGC
CCCAGCAGCAGCAGCATCAACAGCAACAACAACAGCAGCAGCAGCAACAT
CAGCAGAATATGCACCACCATCAACATCAGCAGCAACACATGCAGCAGCA
GCAGCAACAACAACAACATCAGCAGCAACACCAACAGCAGCAACATCAAC
AACAACAGCAACATCAGCAGCAGCAGCAGCAGCAACAACAGCATCCAACC
ATTGGAATGTTCGATGCCAACGAGGTTAACGATGTCATCCAGAATCCTCC
TCAAATCGGGGTATTCCAGTCTAACAGCGTTCTGACCAACGGTGCCGGCA
GTGGCTCCTCGATCTTTGGCTCCCAATCGAGCAATTCATCGGCGGCAGCT
GCAGATCCCAGCCAGACCACCCGGGAAACTGGCATCATTGAAAAGTTGTT
GCATTCGTATGGATTCATTCAGTGCTGTGAGCGGCAGGCGCGTCTTTTCT
TTCATTTCTCGCAATTCAGCGGTAATATTGATCATTTGAAAATCGGAGAT
CCCGTGGAGTTTGAGATGACCTATGATCGCCGCACCGGCAAGCCGATAGC
TAGTCAAGTATCAAAAATAGCCCCAGAGGTTGTTCTCTCCGAGGAGCGGG
TCACCGGCACGGTGACCACCGAGCTGCGCACCGATAGCGCCAACAATGTG
CTTAACTCCAGCGAGACCACAGGTCGCATAAGCTATGAGAACCGAGGCGA
ATGCTTCTTTTTACCCTATACCAAAGACGATGTGGAAGGTAATGTCAACT
TGCGCGCTGGCGACAAGGTCAGCTTTCAAATCGCAACGAACCAAAGAGGT
AATCTAGGCGCCTGCCATATTCGCCTGGAAAATCCGGCCCAGCCGGTTAA
GTATCGTGGGGTTGTCTGCTCGATGAAGGAGTCGTTTGGCTTTATCGAAC
GTGCCGATGTGGTCAAGGAGATTTTCTTCCACTTCTCAGAGGCTGAGGGC
AATGTTGAGCTGCGTCCCGGTGACGATGTCGAGTTCACCATCCAGACGCG
GAGCGTAAGTGGCAGTGGCGATCCGACCAATCCCAATATGCTCCAATCAA
AAATGCAGTCTGCATCTGTGCCTCCGCAGGGCCGTGAATTTGCGTGCAAC
ATCACGCGCCTAGCTCCGGGATCAGTGATCTTTGAGGACGTCGATAGCAC
GGTGTATAAGGGCCAGGTGCTTAAGTCGCTTGATCGCAACAACCCGGTGC
GCCAGAACAATGATCCCTTGCCGGGTCGTATTCGTTATAGGGCCTTGGAT
TACTCCGAAGTGGAGGTTCCTTTCGGGGACAAGGATCAAAAGGGTGACTT
CACCCTGCGCCACGGCGATTGGGTGCAGTTCCTGCTTGCCACCGATCGGC
GTGATCAATTGCAGAGGGCCACCTCCATTGCCCTGTTGGACGAGACTTTC
AAGGTTTCCGGCGAGAAGCGGGAGCAGGGCACCATTGCCTCTCTCAAGGA
GGGCTTCGGATTCCTGCGCTGCGTAGAGCGTCAGGCTCGTTTATTTTTCC
ACTTTACTGAAGTTTTAGATACGAGCCGCGAAATCGATATCAATGATGAG
GTAGAATTCACTGTCATTCAGGAGCCTGGATTGGCCTATAATAACTCGCG
TTTGCAGGCCATTCGCATTAAACACTTGCCGCCCAACTCAGTGCAATTTG
AAACTCTAGTGGCCAGCAACATAGAAGGATGTGTAACTCGCGAGGCGCCT
AAGAGCCCAATTAAATCTCAAGATCGCGTCGAGGGCGGTGTGATTACCTA
TGAACATGCCGATGTTAAAAAGACTATAATGTATTTTCTTAAAGACTGCG
AAAAACCACCAAGGATTGGGGAGCGCGTACGCTTCGATATTTACATGGTC
AAACGTAACAAGGAGTGTATAGCCGTCAACGTACAGCAAGTATCCCTGCA
TCAGCAGCAACAACAGCAGCAACAGCAGTTGCATCTTAATCAGTCGAATG
CTGGGGCAAATATCAACCAAAATGACCAGCTGGGAGGATTGTCGAATGGA
ATCAGTAGCAGCAGCTCGAATGCTTCGCTACAGAATGGCTATGTCATGCA
CGGCAGCCCTGGCGGCAGCACCAGCAGCGTGGGCAGCAACAATCCGGTTC
ATCTGGATGAATTCAAGATGGAGAACAACAACCATGCCGGATCCGATGCC
GGTCAGGTGTACCGTGGCTTCATAGCCGTTATGAAGGAGAACTTTGGATT
CATTGAGACTTTGTCCCACGATGAGGAGGTCTTCTTTCACTTTAGCAACT
ATATGGGCAATCCCAATTGGTTGGAGCTGGGTCAGGAGGTGGAGTACACT
CTTGCTCGTAATGGGAATACATCCGTTTCTGGAAACTGTCTGCCTGCGGA
AAATGTCCGTATGCTGCCAAAGAACTCTATTCCCCAGCCGGCTGTGCTGG
AAACCACACACAATGGCGTGGTAGCACGTCCACTGCGTTGCATCAATCCC
GACCAGCAGGAATATGCCGGTCTCATTGAAATTCTCGATGAGCTACGTAC
CACTGTCATTTCGCAACACGAATTCGGGATTACTAGTCTGGTGAACAAGA
GGGATCTGCTCCAGAAGGGCGATCTCGTTAGCTTCCGCATCGATGAGAGT
GGTCGAGCAGCATGCGTGAATGCCGTAAGGCAGAAGAAGCGTGCCACTGT
GGACTCCATCAAGGGTCAGTTTGGTTTTCTTAACTTTGAGGTGGAGGACG
GCAAAAAACTGTTCTTCCACATGTCTGAGGTGCAGGGCAATACTGTCGCT
TTACATCCAGGCGATACCGTGGAGTTCTCCGTGGTCACCAATCAGCGCAA
TGGAAAGTCGTCGGCTTGCAATGTTCTGAAAATAAACGATCGTCCGGATC
GTCTGATCTCGCGCCTTAAGCTCAACGGCGATGACACTGTGCCGCGACTG
ATCCTCATTCGCGCACCCAAGGGACCGCAGGGCAAGGGCTTTTCCGTTCT
AGCTCGTCATCCACGCATTCCAGGCAACTTGGTGGAGTAGAAGCTTTCTA
GACCAT
BS29163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unr-RE | 3174 | CG7015-PE | 1..3174 | 17..3190 | 15870 | 100 | Plus |
Unr-RD | 3174 | CG7015-PD | 1..3174 | 17..3190 | 15870 | 100 | Plus |
Unr-RB | 3174 | CG7015-PB | 1..3174 | 17..3190 | 15870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unr-RE | 8799 | CG7015-RE | 3477..6653 | 15..3191 | 15885 | 100 | Plus |
Unr-RD | 4872 | CG7015-RD | 460..3636 | 15..3191 | 15885 | 100 | Plus |
Unr-RB | 7889 | CG7015-RB | 3477..6653 | 15..3191 | 15885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8434784..8435732 | 2995..2047 | 4745 | 100 | Minus |
3L | 28110227 | 3L | 8436246..8436974 | 1723..995 | 3645 | 100 | Minus |
3L | 28110227 | 3L | 8437508..8438057 | 601..52 | 2750 | 100 | Minus |
3L | 28110227 | 3L | 8437039..8437434 | 996..601 | 1980 | 100 | Minus |
3L | 28110227 | 3L | 8434549..8434734 | 3174..2989 | 930 | 100 | Minus |
3L | 28110227 | 3L | 8435789..8435962 | 2049..1876 | 870 | 100 | Minus |
3L | 28110227 | 3L | 8436021..8436176 | 1878..1723 | 780 | 100 | Minus |
3L | 28110227 | 3L | 8438193..8438231 | 53..15 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2672 | 2055..2317 | 161 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6839 | 2083..2180 | 157 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2543 | 2084..2295 | 156 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2519 | 2084..2292 | 155 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2526 | 2099..2332 | 154 | 58.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1111..1148 | 2098..2135 | 154 | 89.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6818 | 2083..2135 | 148 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6923 | 2084..2278 | 146 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1580 | 2072..2143 | 143 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6937 | 2100..2317 | 142 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2462 | 2096..2182 | 141 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2606..2671 | 2083..2148 | 141 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1586 | 2084..2128 | 135 | 77.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1595 | 2083..2139 | 134 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2662 | 2098..2127 | 132 | 93.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1097..1144 | 2096..2143 | 132 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6825 | 2084..2127 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6820..6872 | 2083..2135 | 130 | 71.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1103 | 2096..2135 | 128 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2372 | 2084..2128 | 126 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6877 | 2084..2128 | 126 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6854 | 2084..2135 | 125 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2443 | 2096..2181 | 124 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6956 | 2100..2228 | 124 | 59.5 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7957..7995 | 2095..2133 | 123 | 79.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9401..9439 | 2095..2133 | 123 | 79.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1038..1120 | 2048..2128 | 122 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1124..1160 | 2099..2135 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2792..2867 | 2083..2159 | 121 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1559 | 2102..2143 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2511 | 2099..2215 | 119 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2741..2798 | 2071..2128 | 118 | 73.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3256..3310 | 2071..2127 | 117 | 71.9 | Plus |
X-element | 4740 | X-element ROXELEMENT 4740bp | 1745..1792 | 2097..2145 | 116 | 73.5 | Plus |
BS29163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:49 Download gff for
BS29163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unr-RB | 458..3631 | 17..3190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:50 Download gff for
BS29163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unr-RB | 3479..6652 | 17..3190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:37 Download gff for
BS29163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unr-RB | 3479..6652 | 17..3190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:37 Download gff for
BS29163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8436022..8436175 | 1724..1877 | 100 | <- | Minus |
3L | 8434469..8434485 | 3174..3190 | 100 | <- | Minus |
3L | 8434550..8434727 | 2996..3173 | 100 | <- | Minus |
3L | 8434784..8435731 | 2048..2995 | 100 | <- | Minus |
3L | 8435791..8435960 | 1878..2047 | 100 | <- | Minus |
3L | 8436246..8436972 | 997..1723 | 100 | <- | Minus |
3L | 8437039..8437433 | 602..996 | 100 | <- | Minus |
3L | 8437508..8438055 | 54..601 | 100 | <- | Minus |
3L | 8438193..8438229 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:50 Download gff for
BS29163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8429122..8429275 | 1724..1877 | 100 | <- | Minus |
arm_3L | 8427569..8427585 | 3174..3190 | 100 | <- | Minus |
arm_3L | 8427650..8427827 | 2996..3173 | 100 | <- | Minus |
arm_3L | 8427884..8428831 | 2048..2995 | 100 | <- | Minus |
arm_3L | 8428891..8429060 | 1878..2047 | 100 | <- | Minus |
arm_3L | 8429346..8430072 | 997..1723 | 100 | <- | Minus |
arm_3L | 8430139..8430533 | 602..996 | 100 | <- | Minus |
arm_3L | 8430608..8431155 | 54..601 | 100 | <- | Minus |
arm_3L | 8431293..8431329 | 17..53 | 100 | | Minus |
BS29163.pep Sequence
Translation from 16 to 3189
> BS29163.pep
MNTQSKVYRTGEEIYDNLPCDSYFNMNAIRNLGIPTTFPTIGTFTLDSTT
LGLQPQGQGPSPQQQQHQQQQQQQQQQHQQNMHHHQHQQQHMQQQQQQQQ
HQQQHQQQQHQQQQQHQQQQQQQQQHPTIGMFDANEVNDVIQNPPQIGVF
QSNSVLTNGAGSGSSIFGSQSSNSSAAAADPSQTTRETGIIEKLLHSYGF
IQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSK
IAPEVVLSEERVTGTVTTELRTDSANNVLNSSETTGRISYENRGECFFLP
YTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRLENPAQPVKYRGVV
CSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSVSGS
GDPTNPNMLQSKMQSASVPPQGREFACNITRLAPGSVIFEDVDSTVYKGQ
VLKSLDRNNPVRQNNDPLPGRIRYRALDYSEVEVPFGDKDQKGDFTLRHG
DWVQFLLATDRRDQLQRATSIALLDETFKVSGEKREQGTIASLKEGFGFL
RCVERQARLFFHFTEVLDTSREIDINDEVEFTVIQEPGLAYNNSRLQAIR
IKHLPPNSVQFETLVASNIEGCVTREAPKSPIKSQDRVEGGVITYEHADV
KKTIMYFLKDCEKPPRIGERVRFDIYMVKRNKECIAVNVQQVSLHQQQQQ
QQQQLHLNQSNAGANINQNDQLGGLSNGISSSSSNASLQNGYVMHGSPGG
STSSVGSNNPVHLDEFKMENNNHAGSDAGQVYRGFIAVMKENFGFIETLS
HDEEVFFHFSNYMGNPNWLELGQEVEYTLARNGNTSVSGNCLPAENVRML
PKNSIPQPAVLETTHNGVVARPLRCINPDQQEYAGLIEILDELRTTVISQ
HEFGITSLVNKRDLLQKGDLVSFRIDESGRAACVNAVRQKKRATVDSIKG
QFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSA
CNVLKINDRPDRLISRLKLNGDDTVPRLILIRAPKGPQGKGFSVLARHPR
IPGNLVE*
BS29163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unr-PE | 1057 | CG7015-PE | 1..1057 | 1..1057 | 5515 | 100 | Plus |
Unr-PD | 1057 | CG7015-PD | 1..1057 | 1..1057 | 5515 | 100 | Plus |
Unr-PB | 1057 | CG7015-PB | 1..1057 | 1..1057 | 5515 | 100 | Plus |
Unr-PA | 1039 | CG7015-PA | 1..1039 | 1..1057 | 5392 | 98.3 | Plus |
Unr-PC | 1032 | CG7015-PC | 1..1032 | 1..1057 | 5350 | 97.6 | Plus |