BS29164.complete Sequence
1307 bp assembled on 2012-04-25
GenBank Submission: KX805961
> BS29164.complete
GAAGTTATCAGTCGACATGTCGCAGATCTGTAAGCGCGGTTTGTTGATCA
GCAACCGATTGGCGCCCGCCGCCCTCCGCTGCAAATCAACATGGTTCTCC
GAGGTGCAGATGGGCCCACCCGATGCCATCTTGGGTGTCACGGAAGCCTT
CAAGAAGGACACCAACCCCAAGAAGATCAACTTGGGCGCTGGCGCCTATC
GCGATGACAACACCCAGCCCTTCGTGCTCCCCAGTGTTCGGGAGGCCGAG
AAGAGAGTGGTGAGCCGTAGTCTGGACAAGGAGTACGCCACAATCATCGG
CATTCCCGAGTTCTACAACAAGGCCATCGAGCTGGCATTGGGCAAGGGAT
CCAAGCGTTTGGCGGCCAAGCACAACGTGACCGCCCAGTCCATCAGTGGA
ACTGGAGCTCTGCGCATCGGAGCCGCCTTCCTGGCCAAGTTCTGGCAGGG
CAACCGCGAGATCTACATCCCGTCGCCATCGTGGGGCAACCATGTGGCCA
TTTTCGAGCACGCCGGTCTGCCGGTGAACCGATACCGCTACTACGACAAG
GACACCTGTGCCCTGGACTTTGGCGGCCTGATCGAGGATCTGAAGAAAAT
CCCCGAGAAGAGCATTGTTCTTCTGCACGCCTGCGCCCACAACCCCACTG
GAGTGGATCCCACTCTGGAGCAGTGGCGTGAGATCTCGGCTCTGGTCAAG
AAACGCAATCTGTATCCCTTCATCGACATGGCCTACCAAGGCTTCGCCAC
CGGAGACATTGACCGCGACGCCCAGGCGGTCCGCACCTTCGAGGCCGATG
GCCACGACTTCTGCCTGGCCCAGAGTTTCGCCAAGAACATGGGATTGTAT
GGTGAGCGCGCTGGCGCCTTCACCGTGCTGTGCTCCGACGAGGAGGAGGC
TGCTCGCGTGATGTCCCAAGTTAAGATCCTGATCCGTGGTCTGTACTCCA
ATCCCCCGGTGCACGGAGCTCGTATTGCCGCCGAGATCCTCAACAACGAG
GACTTGCGCGCCCAGTGGCTGAAGGATGTGAAGCTGATGGCCGACCGCAT
CATCGATGTGCGCACCAAGCTCAAGGACAATCTAATTAAGCTGGGATCCA
GCCAGAACTGGGACCACATTGTCAACCAAATCGGCATGTTCTGCTTCACG
GGCCTGAAGCCGGAGCAGGTGCAGAAGCTGATCAAGGATCACAGCGTCTA
TCTCACCAACGATGGACGTGTTTCGATGGCGGGAGTCACCAGCAAGAATG
TCGAGTACCTGGCTGAGAGCATACACAAGGTTACCAAGTAAAAGCTTTCT
AGACCAT
BS29164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got2-RA | 1275 | CG4233-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Got2-RB | 1296 | CG4233-PB | 90..1296 | 85..1291 | 6035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got2-RA | 1575 | CG4233-RA | 107..1381 | 17..1291 | 6375 | 100 | Plus |
Got2-RB | 1560 | CG4233-RB | 160..1366 | 85..1291 | 6035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1984706..1985403 | 1291..594 | 3490 | 100 | Minus |
2L | 23513712 | 2L | 1985471..1985721 | 595..345 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 1985945..1986105 | 245..85 | 805 | 100 | Minus |
2L | 23513712 | 2L | 1985781..1985885 | 347..243 | 525 | 100 | Minus |
2L | 23513712 | 2L | 1987585..1987652 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3619..3678 | 320..261 | 111 | 65 | Minus |
BS29164.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:59 Download gff for
BS29164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got2-RA | 110..1382 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for
BS29164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got2-RA | 107..1379 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:42 Download gff for
BS29164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got2-RA | 107..1379 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:42 Download gff for
BS29164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1984708..1985401 | 596..1289 | 100 | <- | Minus |
2L | 1985471..1985719 | 347..595 | 100 | <- | Minus |
2L | 1985782..1985883 | 245..346 | 100 | <- | Minus |
2L | 1985946..1986105 | 85..244 | 100 | <- | Minus |
2L | 1987585..1987652 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for
BS29164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1984708..1985401 | 596..1289 | 100 | <- | Minus |
arm_2L | 1985471..1985719 | 347..595 | 100 | <- | Minus |
arm_2L | 1985782..1985883 | 245..346 | 100 | <- | Minus |
arm_2L | 1985946..1986105 | 85..244 | 100 | <- | Minus |
arm_2L | 1987585..1987652 | 17..84 | 100 | | Minus |
BS29164.pep Sequence
Translation from 16 to 1290
> BS29164.pep
MSQICKRGLLISNRLAPAALRCKSTWFSEVQMGPPDAILGVTEAFKKDTN
PKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYATIIGIPEFY
NKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKFWQGNREIY
IPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDLKKIPEKSI
VLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQGFATGDIDR
DAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDEEEAARVMS
QVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMADRIIDVRT
KLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDHSVYLTNDG
RVSMAGVTSKNVEYLAESIHKVTK*
BS29164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got2-PA | 424 | CG4233-PA | 1..424 | 1..424 | 2205 | 100 | Plus |
Got2-PB | 431 | CG4233-PB | 31..431 | 24..424 | 2089 | 100 | Plus |
Got1-PA | 416 | CG8430-PA | 4..398 | 27..420 | 938 | 46.9 | Plus |
Got1-PB | 437 | CG8430-PB | 25..419 | 27..420 | 938 | 46.9 | Plus |