Clone BS29164 Report

Search the DGRC for BS29164

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:291
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptGot2-RA
Protein status:BS29164.pep: gold
Sequenced Size:1307

Clone Sequence Records

BS29164.complete Sequence

1307 bp assembled on 2012-04-25

GenBank Submission: KX805961

> BS29164.complete
GAAGTTATCAGTCGACATGTCGCAGATCTGTAAGCGCGGTTTGTTGATCA
GCAACCGATTGGCGCCCGCCGCCCTCCGCTGCAAATCAACATGGTTCTCC
GAGGTGCAGATGGGCCCACCCGATGCCATCTTGGGTGTCACGGAAGCCTT
CAAGAAGGACACCAACCCCAAGAAGATCAACTTGGGCGCTGGCGCCTATC
GCGATGACAACACCCAGCCCTTCGTGCTCCCCAGTGTTCGGGAGGCCGAG
AAGAGAGTGGTGAGCCGTAGTCTGGACAAGGAGTACGCCACAATCATCGG
CATTCCCGAGTTCTACAACAAGGCCATCGAGCTGGCATTGGGCAAGGGAT
CCAAGCGTTTGGCGGCCAAGCACAACGTGACCGCCCAGTCCATCAGTGGA
ACTGGAGCTCTGCGCATCGGAGCCGCCTTCCTGGCCAAGTTCTGGCAGGG
CAACCGCGAGATCTACATCCCGTCGCCATCGTGGGGCAACCATGTGGCCA
TTTTCGAGCACGCCGGTCTGCCGGTGAACCGATACCGCTACTACGACAAG
GACACCTGTGCCCTGGACTTTGGCGGCCTGATCGAGGATCTGAAGAAAAT
CCCCGAGAAGAGCATTGTTCTTCTGCACGCCTGCGCCCACAACCCCACTG
GAGTGGATCCCACTCTGGAGCAGTGGCGTGAGATCTCGGCTCTGGTCAAG
AAACGCAATCTGTATCCCTTCATCGACATGGCCTACCAAGGCTTCGCCAC
CGGAGACATTGACCGCGACGCCCAGGCGGTCCGCACCTTCGAGGCCGATG
GCCACGACTTCTGCCTGGCCCAGAGTTTCGCCAAGAACATGGGATTGTAT
GGTGAGCGCGCTGGCGCCTTCACCGTGCTGTGCTCCGACGAGGAGGAGGC
TGCTCGCGTGATGTCCCAAGTTAAGATCCTGATCCGTGGTCTGTACTCCA
ATCCCCCGGTGCACGGAGCTCGTATTGCCGCCGAGATCCTCAACAACGAG
GACTTGCGCGCCCAGTGGCTGAAGGATGTGAAGCTGATGGCCGACCGCAT
CATCGATGTGCGCACCAAGCTCAAGGACAATCTAATTAAGCTGGGATCCA
GCCAGAACTGGGACCACATTGTCAACCAAATCGGCATGTTCTGCTTCACG
GGCCTGAAGCCGGAGCAGGTGCAGAAGCTGATCAAGGATCACAGCGTCTA
TCTCACCAACGATGGACGTGTTTCGATGGCGGGAGTCACCAGCAAGAATG
TCGAGTACCTGGCTGAGAGCATACACAAGGTTACCAAGTAAAAGCTTTCT
AGACCAT

BS29164.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-RA 1275 CG4233-PA 1..1275 17..1291 6375 100 Plus
Got2-RB 1296 CG4233-PB 90..1296 85..1291 6035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-RA 1575 CG4233-RA 107..1381 17..1291 6375 100 Plus
Got2-RB 1560 CG4233-RB 160..1366 85..1291 6035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1984706..1985403 1291..594 3490 100 Minus
2L 23513712 2L 1985471..1985721 595..345 1255 100 Minus
2L 23513712 2L 1985945..1986105 245..85 805 100 Minus
2L 23513712 2L 1985781..1985885 347..243 525 100 Minus
2L 23513712 2L 1987585..1987652 84..17 340 100 Minus
Blast to na_te.dros performed 2014-11-28 05:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 3619..3678 320..261 111 65 Minus

BS29164.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:06:59 Download gff for BS29164.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 110..1382 17..1289 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for BS29164.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 107..1379 17..1289 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:42 Download gff for BS29164.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 107..1379 17..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:42 Download gff for BS29164.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1984708..1985401 596..1289 100 <- Minus
2L 1985471..1985719 347..595 100 <- Minus
2L 1985782..1985883 245..346 100 <- Minus
2L 1985946..1986105 85..244 100 <- Minus
2L 1987585..1987652 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for BS29164.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1984708..1985401 596..1289 100 <- Minus
arm_2L 1985471..1985719 347..595 100 <- Minus
arm_2L 1985782..1985883 245..346 100 <- Minus
arm_2L 1985946..1986105 85..244 100 <- Minus
arm_2L 1987585..1987652 17..84 100   Minus

BS29164.pep Sequence

Translation from 16 to 1290

> BS29164.pep
MSQICKRGLLISNRLAPAALRCKSTWFSEVQMGPPDAILGVTEAFKKDTN
PKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYATIIGIPEFY
NKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKFWQGNREIY
IPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDLKKIPEKSI
VLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQGFATGDIDR
DAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDEEEAARVMS
QVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMADRIIDVRT
KLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDHSVYLTNDG
RVSMAGVTSKNVEYLAESIHKVTK*

BS29164.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-PA 424 CG4233-PA 1..424 1..424 2205 100 Plus
Got2-PB 431 CG4233-PB 31..431 24..424 2089 100 Plus
Got1-PA 416 CG8430-PA 4..398 27..420 938 46.9 Plus
Got1-PB 437 CG8430-PB 25..419 27..420 938 46.9 Plus