BS29165.complete Sequence
1768 bp assembled on 2012-06-11
GenBank Submission: KX802258
> BS29165.complete
GAAGTTATCAGTCGACATGTCCATAACCTTACTGCGAGGTGGCAAGCAAA
AGACAACCACTTGCGTAGGAATGACCGTAATGGCCAAGACTACGTTTGAA
GAAATATGCGAGAATGCCAAATTAGCACGGGACATGGCTCTGACGGGCAA
CTACGACTCAGCCTGCATCTACTATGAGGGCCTCCAGGGGCTGCTCGCCC
GCCAGCTGAAGGCCACCGCGGATCCGCTACGCAAGGGCAAGTGGAGCATG
ATCAACCAGCAGATTAGCCAGGAGCACGCCAAAATCAAGGCCATTCAGAG
AACCCTACAAGACATCTCGCTGGACCTACAGTCAACCAAATTTGCACACA
AGCTGCGACACCAGCTCAGCGAAGAAAGCACCACCAGTAAAGATCCATCT
GCCTGGTTCAAGCCGGACCCCGACATTTGGACGCCTCCGCCCAAGGATCC
AGATGTGTGGGGTCCGCCGAAGCCACCACCCACCACTCAGGCCGTTGGCC
GAAGAGCCGCACCGAACAACCGCCGCACCACTCCGGCAACGCAAAACAGC
CGCCCCAGCAGCACAATCCCGCAGAGCACTGCCCGGAATGGTCCGGCCTC
GACACGCAATTCCCGCAACTCAACGTCCGCCACAGCACCGAGCGGCGGAG
CACGCACCACCAATGGAAGGGCTGGCGGTCGCAAGCTATCCACATCGAAC
ACCAACGAGGCTAGGGACGACGACTCCACCGCTGCAGGCAACAATGGCGG
AGCGGCTGGCGATGGAGAAAACGGCGATCCGCAGGCCGCCCAAGAGGAAG
AGCGCAAGTTTCAGCCCAACAACCACATCGAAGCCGAGCTAGTCGACATT
CTTGAACGTGATATTCTTCAAAAGGATCCCAAAGTGCGCTGGAGCGACAT
TGCCGACCTGCACGACGCCAAGCGGTTGCTGGAGGAGGCCGTCGTGCTGC
CAATGCTCATGCCGGACTACTTCAAGGGTATCCGGCGACCGTGGAAGGGC
GTGTTAATGGTGGGACCTCCAGGCACGGGCAAGACAATGCTCGCCAAGGC
GGTGGCAACCGAATGCGGAACTACGTTCTTCAACGTGAGCTCGGCCACGC
TGACGTCCAAGTACCGAGGTGAGTCGGAAAAGATGGTGCGGCTCCTGTTC
GAGATGGCCAGGTTCTACGCGCCCAGCACAATTTTCATCGACGAGATCGA
CTCCCTGTGCTCGCGCCGAGGATCGGAATCAGAGCACGAGGCCTCGCGAC
GAGTGAAGTCTGAGCTGCTGGTCCAAATGGACGGCGTGGGCGGCGGAGAG
GAACAGGCCAAGGTGGTCATGGTGCTGGCCGCCACCAACTTTCCTTGGGA
CATCGATGAAGCGCTTCGGCGTCGTTTGGAAAAACGCATTTACATCCCAC
TGCCATCGGATGAAGGTCGCGAGGCGCTGCTCAAGATCAATCTCCGCGAG
GTCAAGGTGGACGATAGCGTCGATCTTACCTACGTAGCCAACGAGCTGAA
GGGATATTCCGGAGCTGACATCACAAACGTGTGCAGGGAGGCCAGCATGA
TGTCGATGCGGAGAAAGATCGCAGGACTGACCCCAGAGCAGATTCGGCAG
TTGGCTACGGAAGAGGTGGATTTGCCCGTTTCCAACAAGGATTTCAACGA
GGCCATGAGTCGCTGCAACAAGAGCGTGTCCCGGGCAGACCTGGACAAGT
ACGAGAAGTGGATGAGGGAGTTCGGATCGTCATGAAAGCTTTCTAGACCA
TTCGTGAGGGGCGAAAGG
BS29165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kat60-RA | 1719 | CG10229-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| Kat60-RB | 1818 | CG10229-PB | 112..1818 | 29..1735 | 8535 | 100 | Plus |
| kat-60L1-RH | 1830 | CG1193-PH | 1052..1500 | 957..1405 | 625 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kat60-RA | 2563 | CG10229-RA | 142..1860 | 17..1735 | 8595 | 100 | Plus |
| Kat60-RB | 2662 | CG10229-RB | 253..1959 | 29..1735 | 8535 | 100 | Plus |
| kat-60L1-RH | 2313 | CG1193-RH | 1190..1638 | 957..1405 | 625 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5230022..5230626 | 854..250 | 3025 | 100 | Minus |
| 3R | 32079331 | 3R | 5228276..5228838 | 1537..975 | 2815 | 100 | Minus |
| 3R | 32079331 | 3R | 5230993..5231214 | 250..29 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 5227992..5228193 | 1735..1534 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 5786287..5786735 | 957..1405 | 625 | 75.9 | Plus |
| 3R | 32079331 | 3R | 5229706..5229829 | 977..854 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:33:25 has no hits.
BS29165.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:50 Download gff for
BS29165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| katanin-60-RA | 151..1873 | 17..1739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:52 Download gff for
BS29165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kat60-RA | 142..1864 | 17..1739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:39 Download gff for
BS29165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kat60-RA | 142..1864 | 17..1739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:39 Download gff for
BS29165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5227988..5228190 | 1537..1739 | 99 | <- | Minus |
| 3R | 5228277..5228836 | 977..1536 | 100 | <- | Minus |
| 3R | 5229707..5229828 | 855..976 | 100 | <- | Minus |
| 3R | 5230022..5230625 | 251..854 | 100 | <- | Minus |
| 3R | 5230993..5231214 | 29..250 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:52 Download gff for
BS29165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1053710..1053912 | 1537..1739 | 99 | <- | Minus |
| arm_3R | 1053999..1054558 | 977..1536 | 100 | <- | Minus |
| arm_3R | 1055429..1055550 | 855..976 | 100 | <- | Minus |
| arm_3R | 1055744..1056347 | 251..854 | 100 | <- | Minus |
| arm_3R | 1056715..1056936 | 29..250 | 100 | <- | Minus |
BS29165.pep Sequence
Translation from 16 to 1734
> BS29165.pep
MSITLLRGGKQKTTTCVGMTVMAKTTFEEICENAKLARDMALTGNYDSAC
IYYEGLQGLLARQLKATADPLRKGKWSMINQQISQEHAKIKAIQRTLQDI
SLDLQSTKFAHKLRHQLSEESTTSKDPSAWFKPDPDIWTPPPKDPDVWGP
PKPPPTTQAVGRRAAPNNRRTTPATQNSRPSSTIPQSTARNGPASTRNSR
NSTSATAPSGGARTTNGRAGGRKLSTSNTNEARDDDSTAAGNNGGAAGDG
ENGDPQAAQEEERKFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHD
AKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC
GTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSR
RGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEAL
RRRLEKRIYIPLPSDEGREALLKINLREVKVDDSVDLTYVANELKGYSGA
DITNVCREASMMSMRRKIAGLTPEQIRQLATEEVDLPVSNKDFNEAMSRC
NKSVSRADLDKYEKWMREFGSS*
BS29165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kat60-PA | 572 | CG10229-PA | 1..572 | 1..572 | 2959 | 100 | Plus |
| Kat60-PB | 605 | CG10229-PB | 38..605 | 5..572 | 2941 | 100 | Plus |
| kat-60L1-PF | 605 | CG1193-PF | 160..604 | 162..571 | 1115 | 52.1 | Plus |
| kat-60L1-PA | 605 | CG1193-PA | 160..604 | 162..571 | 1115 | 52.1 | Plus |
| kat-60L1-PH | 609 | CG1193-PH | 164..608 | 162..571 | 1115 | 52.1 | Plus |
