BS29166.complete Sequence
2396 bp assembled on 2012-05-15
GenBank Submission: KX804985
> BS29166.complete
GAAGTTATCAGTCGACATGATGAGCTTCACCATTACCTTGGCGCTACTGC
TCCTGGCAGTTCTGATCCTGGGCATCTTGTTCGCCTGCCACTGTCTTGGT
CCGCGGGCCGCCAACTGGATGCGTATGCGATCCAGCAAGGAGGAAAAGAT
CGGACTATCCAATCACAAGCAAAAGCTCTTCCATGCCAATGGTTATATGG
CCAGTATACAATCCGGCTCCGAGTTCCTGCTGAGCACCAGTGGTAGTTTC
AAGCGTTTCGATACCATCGACAAGGAGGACTACAATCGCTCCCAGCAGAC
GCATCAGACGCATCTGTTCCTGATGAACGGCGGCGGTGCGGTTTCGATAA
CCGGATCATCCAGTGCCCTGCAGGCCACCACGGCCATGTGGCATCTACCG
CGTTCGGGTATTAAGATTCCACCACCGCCCGATCGACCAGCTCCATCTCC
GAATAGTGCTGCAGCAGCCGGCAAAACGGTTACCTTCTCTTTGAGCCAGG
TAAACGAGGTCATCATGCCCGGCGAGCAGGTGACATCCAACGATCAGGAA
CGTCGCTCCTGCCTGCGACAAAATGGTGGAACTGCGGGCGGTGCTGGCGG
CGGTGGTGTGCTGCCGCAGCCACTGGAGGCACCACCTCCGCCACGACTCA
CCGCATCGACGTCGGTGAACTTATCGGGTACGGCGATTCCAAGGCCCATT
GCCAAGCGGCAAGTGTCCACGCAGCCGGCCAACAATAGCGGATGCCAGCC
GGAGCAGACCGTGGTGACCCCGATGCGGGAGGGTGAGAGAAAAGCGCCTG
CCTTGAAGCGTAGAAACTCCAGCACTAATCCCTTCCTGTGCGAATCAACG
GAGCAGATACCCAGTAATCCCATTTCTGAACCTCTGAATGCCACGGTGGC
TTCTCTGGAAAAAACGACTATTTCAACAAGTGAATGTACTCCTATAACTG
CTCCTCTAGAGACTCCAAATGGGCCTATTTCAACGGATACTCCATCCACC
ATACATCACAATGGCAATCCCTTCGTGGAGAGAGAAAGTCTGTCCAGCAG
ACTCCTGAAGATCCATAACACAACGAATCCTTTCACGGGACTCTCGCAAC
GCGTCAAGGGTCCGCATCTACTGCAAAAGACCATTTCGGAGGATTATCTA
TTTCGGAAATTGGGTGTCAATTGTCCGATGGCCAATGGCAATGGTACGGG
ACCAGGATCTGGTCATGTCAACGGAAATGGCAATGGAACTTGGTCCTTTG
GACGCTCCCTGTTGCGACAGGACTCCACATTGAGTCTGGGCATGGGCTTG
GGCAGAAGGAACAGCTCCCAGGTATCCCTGGATTCACATGCGGGATCGGT
GCCCGGTTCAATGGATGGCATCAATTTGGAGCGAGCCATCTCCTGCGATT
CGGTAACCTCGGACTCCACTCTATTCCTGGATCAATTGGATCAGCCCTAC
ACTCAGATAACCGGATATTTATGCGTTGGCCTTAACTACGATCAGATGAG
TATTAGCAACGAGGGCATGGAACTGACTGTTAGTGTCCTGGAGGCCAAGG
GACTCATATGTCCATTCAGCGTTGAATCCCTGGACACCTTTGTGCGCATC
TACTTGGTGCCGGATCATCCGGGAGCTATGCAAACTAAGGTGGTCAAGGG
AACACTGACACCCAGCTACAACGAAAGTTTCGATTTCTGGCTGCACAAGC
GACAGGCGCGCCATTCGCTGTGGTTCCATCTGTACCACAATGGACCCGCC
CACACGCTCATTGGCGAGGCGGAGATGGAAATTGGTGAGATGCCACGCCC
CATTACCACATGGATACCACTGTCCGATTCGCGCAAGTGCAACGCCCGCT
GGGGCGAGCTAATGTTCTCTCTAAGCTATCTGCCCACGGCGGAAAGACTA
ACCATCGTCGTGGTCAAGGCACGGAATCTCAAGCTGGACGGTGAGCAACC
GGCTCCGGAATCCGCGGAAACGGTGCACAGCGTCTTCGTTAAGGTCTACC
TGATGGACAAGGATCGCAAGGTGCTAAAGAAGCGCACCTCACTGAAGCGC
AAGGATCGCAGTCCGATCTTCAACGAATCGATGATCTTCAGTGTGCCGCC
ACCCAGTTTGACCACCACCCAGCTGCGGGTGACCGTGTTCGGGGTGACAA
CTAGTGGGGTGACCCCGTTGGGTCACATCGTGGCCGGCAGCTGTGCGGTG
GGCAAGGGATTGCGCCATTGGCACCAGATGCTCTCGTCGCTTAGGAAACC
GGTGGCCATGTGGCATGTCCTGCGGCGTGCGGTCAATCAGCCGATTTTCA
CGGGCGGCGCCGAGGCGGTGGTGGCCGCCATGCAAAACACCCTGCAACGC
TCCACCGCCAAGCGGAACAGCATCGTCTAGAAGCTTTCTAGACCAT
BS29166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt12-RA | 2364 | CG10617-PA | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| Syt12-RB | 2364 | CG10617-PB | 1..2364 | 17..2380 | 11820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt12-RA | 4823 | CG10617-RA | 242..2606 | 17..2381 | 11825 | 100 | Plus |
| Syt12-RB | 4820 | CG10617-RB | 239..2603 | 17..2381 | 11825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13363584..13364873 | 206..1495 | 6450 | 100 | Plus |
| X | 23542271 | X | 13365571..13365962 | 1990..2381 | 1960 | 100 | Plus |
| X | 23542271 | X | 13365138..13365495 | 1638..1995 | 1790 | 100 | Plus |
| X | 23542271 | X | 13363292..13363480 | 17..205 | 945 | 100 | Plus |
| X | 23542271 | X | 13364931..13365078 | 1495..1642 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:58:45 has no hits.
BS29166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:57 Download gff for
BS29166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt12-RA | 240..2603 | 17..2380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:33 Download gff for
BS29166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt12-RB | 239..2602 | 17..2380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:30 Download gff for
BS29166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt12-RB | 239..2602 | 17..2380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:30 Download gff for
BS29166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13363292..13363480 | 17..205 | 100 | -> | Plus |
| X | 13363584..13364872 | 206..1494 | 100 | -> | Plus |
| X | 13364931..13365075 | 1495..1639 | 100 | -> | Plus |
| X | 13365140..13365493 | 1640..1993 | 100 | -> | Plus |
| X | 13365575..13365961 | 1994..2380 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:33 Download gff for
BS29166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13257325..13257513 | 17..205 | 100 | -> | Plus |
| arm_X | 13257617..13258905 | 206..1494 | 100 | -> | Plus |
| arm_X | 13258964..13259108 | 1495..1639 | 100 | -> | Plus |
| arm_X | 13259173..13259526 | 1640..1993 | 100 | -> | Plus |
| arm_X | 13259608..13259994 | 1994..2380 | 100 | | Plus |
BS29166.pep Sequence
Translation from 16 to 2379
> BS29166.pep
MMSFTITLALLLLAVLILGILFACHCLGPRAANWMRMRSSKEEKIGLSNH
KQKLFHANGYMASIQSGSEFLLSTSGSFKRFDTIDKEDYNRSQQTHQTHL
FLMNGGGAVSITGSSSALQATTAMWHLPRSGIKIPPPPDRPAPSPNSAAA
AGKTVTFSLSQVNEVIMPGEQVTSNDQERRSCLRQNGGTAGGAGGGGVLP
QPLEAPPPPRLTASTSVNLSGTAIPRPIAKRQVSTQPANNSGCQPEQTVV
TPMREGERKAPALKRRNSSTNPFLCESTEQIPSNPISEPLNATVASLEKT
TISTSECTPITAPLETPNGPISTDTPSTIHHNGNPFVERESLSSRLLKIH
NTTNPFTGLSQRVKGPHLLQKTISEDYLFRKLGVNCPMANGNGTGPGSGH
VNGNGNGTWSFGRSLLRQDSTLSLGMGLGRRNSSQVSLDSHAGSVPGSMD
GINLERAISCDSVTSDSTLFLDQLDQPYTQITGYLCVGLNYDQMSISNEG
MELTVSVLEAKGLICPFSVESLDTFVRIYLVPDHPGAMQTKVVKGTLTPS
YNESFDFWLHKRQARHSLWFHLYHNGPAHTLIGEAEMEIGEMPRPITTWI
PLSDSRKCNARWGELMFSLSYLPTAERLTIVVVKARNLKLDGEQPAPESA
ETVHSVFVKVYLMDKDRKVLKKRTSLKRKDRSPIFNESMIFSVPPPSLTT
TQLRVTVFGVTTSGVTPLGHIVAGSCAVGKGLRHWHQMLSSLRKPVAMWH
VLRRAVNQPIFTGGAEAVVAAMQNTLQRSTAKRNSIV*
BS29166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt12-PA | 787 | CG10617-PA | 1..787 | 1..787 | 4098 | 100 | Plus |
| Syt12-PB | 787 | CG10617-PB | 1..787 | 1..787 | 4098 | 100 | Plus |
| Syt1-PE | 472 | CG3139-PE | 183..459 | 472..753 | 340 | 31.8 | Plus |
| Syt1-PH | 473 | CG3139-PH | 183..460 | 472..753 | 335 | 32.1 | Plus |
| Syt1-PI | 472 | CG3139-PI | 181..459 | 472..753 | 332 | 31.6 | Plus |
