BS29168.complete Sequence
2684 bp assembled on 2012-06-11
GenBank Submission: KX800165
> BS29168.complete
GAAGTTATCAGTCGACATGGTGACAAAAACGATAAAATCTCTGAATTTAG
AGATCAATTTCGAAGTGGAGGATGTGCCGTATGAGGAGGAAATCCTTCGA
AACGCCTACTCCGTAAAACATTGGCTGCGCTACATTGATCACAAAGCGAA
GGCGCCGAATAATGGTGTTAACATGGTCTATGAGCGTGCTCTGAAAGAGC
TTCCTGGCAGCTATAAGATCTGGCACAATTACCTGAGAACTCGCAGGAAG
CAGGTGCGCGGCAAGATACCCACGGATCCCATGTACGAGGAGGTCAACAG
TGCCTTCGAACGTGCACTGGTGTTTATGCACAAAATGCCACGTATCTGGA
TGGACTACGGTGCCTTCATGACCTCGCAATGCAAGATTACCCGCACCCGG
CACGTTTTCGATCGGGCTCTAAGGGCTCTGCCCATCACGCAGCACGGCAG
GATTTGGCCACTGTATTTGCAGTTTGTACGCCGCTTTGAAATGCCGGAAA
CAGCACTGCGAGTCTACCGTCGATATCTGAAACTCTTTCCCGAGGACACA
GAGGAATATGTGGACTACCTACAGGAAGCAGATCGGCTGGACGAAGCTGC
CCAGCAGCTGGCGCACATCGTCGACAACGAGCACTTCGTTTCCAAACACG
GCAAGTCCAATCATCAGCTGTGGAACGAATTGTGCGACCTCATCTCGAAG
AATCCACACAAGGTGCACTCCTTGAACGTGGACGCCATCATTCGCGGTGG
GCTGCGTCGCTACACCGATCAGCTGGGCCACCTGTGGAACTCTCTGGCGG
ATTACTATGTGCGTTCCGGCTTATTTGATCGGGCAAGAGATATATACGAG
GAAGCCATTCAAACTGTGACCACCGTAAGAGACTTCACCCAAGTCTTTGA
TGAATACGCACAGTTCGAGGAACTCTCGCTGAACAGACGTATGGAGCAGG
TAGCTGCCAATGAGGCGGCCACCGAGGAGGACGACATTGACGTTGAACTG
CGGCTCTCACGCTTCGAATACCTCATGGAGCGCCGTTTGCTGCTGTTGAA
TAGTGTGCTTCTGCGCCAGAATCCGCACAACGTGCACGAGTGGCACAAGC
GGGTGACACTGTACGAGGACAAGCCCGCCGAGATCATCAGTACGTACACC
GAGGCCGTGCAAACAGTGCAGCCGAAGCAGGCGGTCGGCAAACTACACAC
TCTCTGGGTGGAGTTCGCCAAGTTCTACGAGGCCAACGGACAGGTGGAGG
ATGCTCGTGTGGTCTTCGAACGCGGCACTGAGGTTGAGTATGTTAAAGTA
GAGGATCTGGCGGCGGTGTGGTGCGAATGGGCAGAGATGGAGTTACGGCA
ACAGCAGTTCGAGGCGGCACTCAAGCTGATGCAAAGGGCGACGGCCATGC
CAAAGCGAAAGATTGCCTATTATGATGATACGGAAACGGTGCAGGCGCGC
CTTCATCGCTCGCTAAAAGTGTGGTCCATGTACGCGGATTTGGAGGAGTC
ATTCGGCACATTCAAGACGTGCAAAGCCGTCTACGAGCGGATTATTGATC
TGAAAATCTGTACGCCACAGATCATTATCAATTACGGAATGTTCCTCGAG
GAGCACAACTACTTTGAGGAAGCCTACCGAGCCTATGAGAAGGGCATCTC
TCTGTTCAAGTGGCCCAATGTCTACGACATTTGGAACTCTTATCTAACCA
AATTTTTGGAGCGCTATGGCGGCACAAAACTGGAGCGAGCCAGAGATCTC
TTCGAACAGTGCCTGGATCAGTGTCCTCCCGAGCATGCTAAGTACTTTTA
TTTACTGTATGCTAAGTTGGAAGAGGAGCACGGTCTCGCCCGGCATGCCA
TGTCGGTCTATGATCGTGCCACGTCTGCTGTCAAAGAAGATGAGATGTTC
GACATGTACAACATATTTATAAAGAAGGCAGCCGAGATCTATGGCCTGCC
ACGTACCCGCGAGATCTATGAGAAGGCCATCGAATCGCTGCCCGAGCAGA
ATATGCGCCACATGTGCGTTAAGTTTGCTGAGTTGGAAACGAAGTTGGGC
GAAGTGGATCGAGCTAGAGCCATCTATGCTCATTGCTCACAGGTTTGTGA
TCCCCGCATCACTGCAGACTTTTGGCAAACTTGGAAGGAGTTCGAAGTGC
GTCACGGCAACGAAGACACAATGCGCGAAATGCTGCGCATCAAGCGCTCT
GTGCAGGCCACTTACAATACGCAGGTGAACATGATGGCCGCCCAATTCCT
GAGCACAAACAACGGAGCGGCTGCGGATGCTGGAGCAGGAGCTGGACCGG
ATGCCATGCGATTGCTGGAGGAGAAAGCTCGCCAGGCGGCAGCCGAGTCC
AAACAGAAGCCCATCGAGAAGGCGGCCTCGAATATTATGTTTGTGCGCGG
TGAGACTCAGGGTGGTGCTAAGGATAAAAAGGATACGGTCGTCAATCCTG
ATGAGATCGACATTGGAGACAGCGACGAGGACGATGAGGAGGAGGACGAC
GATGAGGAGAACGAGATGACGAACGAGAATCAGGCCAGTGCAGCGGTCAC
GAAAACCGACGAGGAAGGCCTGGTCATGAAGAAACTGCGCTTCGAACAAA
AGGCCATTCCAGCCAAGGTCTTCGGCAGCCTCAAGCCCTCAAATCAAGGC
GACTCTGATGGAGAGTAAAAGCTTTCTAGACCAT
BS29168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fand-RA | 2652 | CG6197-PA | 1..2652 | 17..2668 | 13260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fand-RA | 2793 | CG6197-RA | 83..2735 | 17..2669 | 13265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13593829..13595861 | 62..2094 | 10165 | 100 | Plus |
| 2R | 25286936 | 2R | 13595920..13596499 | 2090..2669 | 2900 | 100 | Plus |
| 2R | 25286936 | 2R | 13593726..13593771 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:33:35 has no hits.
BS29168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:52 Download gff for
BS29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6197-RA | 78..2727 | 17..2666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:56 Download gff for
BS29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6197-RA | 83..2732 | 17..2666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:42 Download gff for
BS29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fand-RA | 83..2732 | 17..2666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:42 Download gff for
BS29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13593726..13593770 | 17..61 | 100 | -> | Plus |
| 2R | 13593829..13595859 | 62..2092 | 100 | -> | Plus |
| 2R | 13595923..13596496 | 2093..2666 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:56 Download gff for
BS29168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9481231..9481275 | 17..61 | 100 | -> | Plus |
| arm_2R | 9481334..9483364 | 62..2092 | 100 | -> | Plus |
| arm_2R | 9483428..9484001 | 2093..2666 | 100 | | Plus |
BS29168.pep Sequence
Translation from 16 to 2667
> BS29168.pep
MVTKTIKSLNLEINFEVEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNG
VNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEVNSAFERA
LVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPLY
LQFVRRFEMPETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQLAH
IVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYT
DQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNRRMEQVAANEAATEEDDIDVELRLSRFEYLMERRLLLLNSVLLR
QNPHNVHEWHKRVTLYEDKPAEIISTYTEAVQTVQPKQAVGKLHTLWVEF
AKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELRQQQFEA
ALKLMQRATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFK
TCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEKGISLFKWP
NVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAK
LEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREI
YEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITA
DFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMAAQFLSTNNG
AAADAGAGAGPDAMRLLEEKARQAAAESKQKPIEKAASNIMFVRGETQGG
AKDKKDTVVNPDEIDIGDSDEDDEEEDDDEENEMTNENQASAAVTKTDEE
GLVMKKLRFEQKAIPAKVFGSLKPSNQGDSDGE*
BS29168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fand-PA | 883 | CG6197-PA | 1..883 | 1..883 | 4641 | 100 | Plus |
| crn-PA | 702 | CG3193-PA | 213..565 | 397..763 | 235 | 25.7 | Plus |
| crn-PA | 702 | CG3193-PA | 79..419 | 397..712 | 213 | 21.4 | Plus |
| crn-PA | 702 | CG3193-PA | 19..355 | 439..790 | 161 | 20.7 | Plus |
