BS29172.complete Sequence
2000 bp assembled on 2012-05-15
GenBank Submission: KX805787
> BS29172.complete
GAAGTTATCAGTCGACATGCTGTTGCGCGGCGTGCAGATCCTGCAGCGAA
GACACCAGCACTTGGGAAAGGCTTTTAGCCAGTGCTCCTTACGTCAAGAC
GGCAGGAACCCTTGGAGGCGGCATGACGGCGAGGCATTCAAACTACAGCC
GTGGAAGCGACCAAGCACGTTCCTTCAGTTTCGCTGCAGCGCCAATGGCA
GTGATTCCAAGAAGGAAAAACCTGTGCAGGAGGAGGCCACCGCTGGTCCA
GTTGCCAAGCCAAAGGAAACGAAAAACTTTGAGGTGAAGACCACAAAGGG
CATCCTGTCTATCAGCACCACCATCGAGGACTCCAAAATTAACGAGATTG
TGTTTGAAAAATCCGATCTGCCACCGGTAACGAAGGTGAAAGAGCCGGTT
TTGGCCGCAAGTGCCATTAATCTACGTTCTACGTCTACTGGAGTAGCAAC
TGGTGCTGTAGGATTGGGAGAGAGCTCTGGTTCTGTTATGAATCCTCCTG
AAACAGTGAAAAGCGCACCTAAAAATTCTCCGTCTGGTGCTGTGCTAGCT
GAAAAGGCGGGAGAAGGTATTCGAACATCCCCACCTGCAGAGGTAACGCC
TCCAGCGCCTGTGATTCCTCTAAAGCGACCCCGATTCGATTATCGTGCTT
CCCTAGAGCGCAACTTTGTGACCCCCAACCGGGCCATCAGCGATTTCTTG
TTGACCGCTGCTCAACTCGAAAGTCTGCCCAAGATCAAGCGGAGATCGCC
GTACGAGCAGGAGCCACCCATGACTGTCTACTGGCGACGGGATGTGGAGG
CTAAGGCCGTCGAAGTGTGGGGGTCCAAGGAAAATCTGTTGCGGGAGCGA
CTCAAGCGGGAGGTGGAGCGCAAGCAATACCAGCAGAATCTATTCACTGT
TAAACGGCGGTTGCGTGACTACCGCAGGGAAATGGGATCTCGAACCAAAG
TAATGCTCGACAACAGAAAGGAGTCGGAGAAGTCCGGGCAAGTGGTGGCC
ACCGCCATCGCTATCAATGCAGCCAATTTGCTTTTCAAGGCAGGAGGTTG
GCTGTACAGCGGTTCTCACAGCATGTTTGCAGAAGTTATCCATTCTTTGG
CCGACTTAATCAACCAGCTCATCCTCGCGTTTGGCATCTACAAGTCCTCT
CAGAGTCCCGATATAGATCATCCATATGGATACATGAACATGCGATATGT
TTCCTCGCTGATTTCGGGCGTTGGCATCTTTTGCGTTGGCTGTGGCCTGT
CCATATACCACGGTATTGATGGCATTCTCCATCCGGAACCCATAACAGAT
CTATTTTGGGTGTACTGTATCTTGATGGGATCATTAGTTTCTGAGGGAGC
CACATTGGTGGTGGCCATTAATGAGCTTAAGCGATCGGCTAAGGAAAACA
ATATGTCCTTTAAGGATTATGTGATTTCTGGCAAGGATCCGTGCGTGAAT
GTGGTGCTGTGTGAAGACGCTGCAGCGGTAACTGGCGTTATGGTGGCTGC
AGCTTGCATGGGATTAAGTAGTTACACAGGATCGCCCATCTTCGACGCCG
CTGGTTCACTGGTTATAGGTGCTCTTCTGGGCGCTGTGGCCTCTTTTATT
ATTTATACAAATGCCAATGCGTTGGTGGGGATATCCATTGCTTCCGAGCG
CCTAGAAAAGATTAACTCTGCTTTGGAGGCTGATGTAATGATCAGAGCGA
TTTACGATGTCAAGGGAATCGATATTGGCAATGCTCGGGTTCGGTATAAG
GCTGAGCTCGACTTTGACGGCCGTGAGCTGACCCGTTCGTATCTGGACAA
ACAGGATCTCGCAAAACTGCTCACGACGGTTCGAGGCTTTCAAAAGGTTG
AGGATCTGGAGAGCTTTCTGCTGGATCAAGGCGAAAACATTGTGGACCTG
ATGGGCGGCGAAATTGATCGCATTGAGATGAACTTGCGGACACAATTCCC
GGAAATACGCCATGTGGACCTGGAAATACTCTAAAAGCTTTCTAGACCAT
BS29172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT49B-RA | 1968 | CG8632-PA | 1..1968 | 17..1984 | 9840 | 100 | Plus |
| ZnT49B-RB | 1983 | CG8632-PB | 1..1983 | 17..1984 | 9655 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT49B-RA | 2534 | CG8632-RA | 330..2297 | 17..1984 | 9840 | 100 | Plus |
| ZnT49B-RB | 2549 | CG8632-RB | 330..2312 | 17..1984 | 9655 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12653188..12654058 | 17..887 | 4355 | 100 | Plus |
| 2R | 25286936 | 2R | 12654306..12654716 | 1011..1421 | 2040 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12654767..12655097 | 1421..1751 | 1655 | 100 | Plus |
| 2R | 25286936 | 2R | 12654126..12654252 | 888..1014 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 12655283..12655397 | 1825..1939 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 12655147..12655223 | 1749..1825 | 385 | 100 | Plus |
| 2R | 25286936 | 2R | 12655461..12655506 | 1939..1984 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:58:34 has no hits.
BS29172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:56 Download gff for
BS29172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8632-RA | 328..2293 | 17..1982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:30 Download gff for
BS29172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8632-RA | 330..2295 | 17..1982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:24 Download gff for
BS29172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT49B-RA | 330..2295 | 17..1982 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:24 Download gff for
BS29172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12653188..12654058 | 17..887 | 100 | -> | Plus |
| 2R | 12654126..12654252 | 888..1014 | 100 | -> | Plus |
| 2R | 12654310..12654716 | 1015..1421 | 100 | -> | Plus |
| 2R | 12654768..12655096 | 1422..1750 | 100 | -> | Plus |
| 2R | 12655149..12655223 | 1751..1825 | 100 | -> | Plus |
| 2R | 12655284..12655397 | 1826..1939 | 100 | -> | Plus |
| 2R | 12655462..12655504 | 1940..1982 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:30 Download gff for
BS29172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8540693..8541563 | 17..887 | 100 | -> | Plus |
| arm_2R | 8541631..8541757 | 888..1014 | 100 | -> | Plus |
| arm_2R | 8541815..8542221 | 1015..1421 | 100 | -> | Plus |
| arm_2R | 8542273..8542601 | 1422..1750 | 100 | -> | Plus |
| arm_2R | 8542654..8542728 | 1751..1825 | 100 | -> | Plus |
| arm_2R | 8542789..8542902 | 1826..1939 | 100 | -> | Plus |
| arm_2R | 8542967..8543009 | 1940..1982 | 100 | | Plus |
BS29172.pep Sequence
Translation from 16 to 1983
> BS29172.pep
MLLRGVQILQRRHQHLGKAFSQCSLRQDGRNPWRRHDGEAFKLQPWKRPS
TFLQFRCSANGSDSKKEKPVQEEATAGPVAKPKETKNFEVKTTKGILSIS
TTIEDSKINEIVFEKSDLPPVTKVKEPVLAASAINLRSTSTGVATGAVGL
GESSGSVMNPPETVKSAPKNSPSGAVLAEKAGEGIRTSPPAEVTPPAPVI
PLKRPRFDYRASLERNFVTPNRAISDFLLTAAQLESLPKIKRRSPYEQEP
PMTVYWRRDVEAKAVEVWGSKENLLRERLKREVERKQYQQNLFTVKRRLR
DYRREMGSRTKVMLDNRKESEKSGQVVATAIAINAANLLFKAGGWLYSGS
HSMFAEVIHSLADLINQLILAFGIYKSSQSPDIDHPYGYMNMRYVSSLIS
GVGIFCVGCGLSIYHGIDGILHPEPITDLFWVYCILMGSLVSEGATLVVA
INELKRSAKENNMSFKDYVISGKDPCVNVVLCEDAAAVTGVMVAAACMGL
SSYTGSPIFDAAGSLVIGALLGAVASFIIYTNANALVGISIASERLEKIN
SALEADVMIRAIYDVKGIDIGNARVRYKAELDFDGRELTRSYLDKQDLAK
LLTTVRGFQKVEDLESFLLDQGENIVDLMGGEIDRIEMNLRTQFPEIRHV
DLEIL*
BS29172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT49B-PA | 655 | CG8632-PA | 1..655 | 1..655 | 3332 | 100 | Plus |
| ZnT49B-PB | 660 | CG8632-PB | 1..660 | 1..655 | 3311 | 99.1 | Plus |
