BS29178.complete Sequence
1481 bp assembled on 2012-04-25
GenBank Submission: KX805471
> BS29178.complete
GAAGTTATCAGTCGACATGCATTGCGGCCGCGTATTGATCAAGTATTTAC
AATTTGACATATTGGTAATTTTGGCAACTATAAGGCTTGGGAATGCACAT
TTTAATGGACCACGCAGTCGGGAAAGAAATTTAAGCAATAGCAATGGAGT
AAAAACTGAAGAAGCATCACATATCGTAAATCCCAGTGGTGTTAGAACAG
TTGGTGAAGTGTTTGTGCCAAAAACCTTTTCACTTAACTCACAGGAACCG
ACATGCGAACAGCTCCGCGCCATGTGGATTTTTTCAAAGAGGCAATCTCG
AGCTGCAGAAATAACCAATGAAATACCAACATATAGGGATCCCTTCACAT
ATAATGTTTGGGAGCCTCTGTTTTTGAACTCTCGAATGCTGGGATCATTA
CGAATGAGCGCAAGGGAAAAAGCCAGGTCACCTGTTTTTGGCCGTGTTCT
CAATCGAGAGCCAAATGGACCGCAGCGTATTCCATTTGAACACCATCGAA
GATTGGGTGAATTTGGATCAAGCGCTTCTGGTTTAAGTCACTCTCGTTAT
TATGGAGCTGAAATGCGACCACAAACGGGAGCTTCCTCAATTCGTAGATC
AAGCCAAAATCGGTATATGGGAATCCCAAATATTACTGGAAATAATCAAA
AAGAAAGCCAAAATTCAGTGGCTATACAAGGAAGCTTTCAAAAGCTCAAA
GAGCTAATTTGGACTGAGAGAGCCAAGGAATTAACAGAGCAACGTCGAGA
TGAGGAGTTGGCAGCGCGTTCTGCTGCCCTTAAAGAAATTGCTAACGGAA
AAAACTTAATTTCAGATTATCACCATCAAGTCGGTAGCTTATCTGATTCT
CCATTAATGGATGAAAATCGAAGTCCTGAAGAAAATAGATACCGAGATAG
TGACGTAAATCGGAAGTCAATTCTAAATGACCAAAATTTTCAAAATAGTA
ATATGAACAAAAATGGAAATAGATCTGGGCTTAAAGCAACAACGCGTCGC
ATTGGAAATTCTCCCTACAATAATAAAGAGTTTCAAACTAATAAGGAACT
TAAAAGCATATTTTTTGGAAGTAACAGAGCTGCCCGCATTAAAATGCCAG
CAACTGAATTTATATCAGATGATTCCACCGAAAGTGATCCTTCCGTGGTT
GGAATCCCAAGAGCATACCCAATTCGAAAATCGCACTTCAGAGAGAGAAA
TCGGTCCCTTCTAAATGAGCCGCAAATAAATGGTAATTTTCATCGCTTTT
TGAGAGGATTACCGACATGGCCTTCCAAAATGTCAATACAAGAAATAGAA
AGCAGCAACTTTTTACCTAAGGAAAATTTGTTAGGCACCCAACTGGGTAT
ACGTGAACTTCAAAATAATCCAAAATATGATAAATATTTGAATTCTTTAG
AAAACAACGATCAAAAATTATCAAATGAACAAAAACGAGGATTCTATGAA
TACGATAACTATTAAAAGCTTTCTAGACCAT
BS29178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32017-RD | 1449 | CG32017-PD | 1..1449 | 17..1465 | 7245 | 100 | Plus |
| CG32017-RC | 1449 | CG32017-PC | 1..1449 | 17..1465 | 7245 | 100 | Plus |
| CG32017-RB | 1449 | CG32017-PB | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32017-RD | 3875 | CG32017-RD | 502..1951 | 17..1466 | 7250 | 100 | Plus |
| CG32017-RC | 3542 | CG32017-RC | 169..1618 | 17..1466 | 7250 | 100 | Plus |
| CG32017-RB | 3812 | CG32017-RB | 439..1888 | 17..1466 | 7250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1140487..1140901 | 1219..805 | 2075 | 100 | Minus |
| 4 | 1348131 | 4 | 1140956..1141367 | 808..397 | 2045 | 99.8 | Minus |
| 4 | 1348131 | 4 | 1139754..1140002 | 1466..1218 | 1245 | 100 | Minus |
| 4 | 1348131 | 4 | 1143627..1143869 | 279..37 | 1215 | 100 | Minus |
| 4 | 1348131 | 4 | 1143449..1143565 | 396..280 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:33:04 has no hits.
BS29178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:01 Download gff for
BS29178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RC | 432..1878 | 17..1463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:43 Download gff for
BS29178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RB | 439..1885 | 17..1463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:33 Download gff for
BS29178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RB | 439..1885 | 17..1463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:33 Download gff for
BS29178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1139757..1140000 | 1220..1463 | 100 | <- | Minus |
| 4 | 1140487..1140901 | 805..1219 | 100 | <- | Minus |
| 4 | 1140960..1141367 | 397..804 | 100 | <- | Minus |
| 4 | 1143449..1143565 | 280..396 | 100 | <- | Minus |
| 4 | 1143627..1143868 | 38..279 | 100 | <- | Minus |
| 4 | 1143985..1144005 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:43 Download gff for
BS29178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1160383..1160626 | 1220..1463 | 100 | <- | Minus |
| arm_4 | 1161113..1161527 | 805..1219 | 100 | <- | Minus |
| arm_4 | 1161586..1161993 | 397..804 | 100 | <- | Minus |
| arm_4 | 1164075..1164191 | 280..396 | 100 | <- | Minus |
| arm_4 | 1164253..1164494 | 38..279 | 100 | <- | Minus |
| arm_4 | 1164611..1164631 | 17..37 | 100 | | Minus |
BS29178.pep Sequence
Translation from 16 to 1464
> BS29178.pep
MHCGRVLIKYLQFDILVILATIRLGNAHFNGPRSRERNLSNSNGVKTEEA
SHIVNPSGVRTVGEVFVPKTFSLNSQEPTCEQLRAMWIFSKRQSRAAEIT
NEIPTYRDPFTYNVWEPLFLNSRMLGSLRMSAREKARSPVFGRVLNREPN
GPQRIPFEHHRRLGEFGSSASGLSHSRYYGAEMRPQTGASSIRRSSQNRY
MGIPNITGNNQKESQNSVAIQGSFQKLKELIWTERAKELTEQRRDEELAA
RSAALKEIANGKNLISDYHHQVGSLSDSPLMDENRSPEENRYRDSDVNRK
SILNDQNFQNSNMNKNGNRSGLKATTRRIGNSPYNNKEFQTNKELKSIFF
GSNRAARIKMPATEFISDDSTESDPSVVGIPRAYPIRKSHFRERNRSLLN
EPQINGNFHRFLRGLPTWPSKMSIQEIESSNFLPKENLLGTQLGIRELQN
NPKYDKYLNSLENNDQKLSNEQKRGFYEYDNY*
BS29178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32017-PD | 482 | CG32017-PD | 1..482 | 1..482 | 2510 | 100 | Plus |
| CG32017-PC | 482 | CG32017-PC | 1..482 | 1..482 | 2510 | 100 | Plus |
| CG32017-PB | 482 | CG32017-PB | 1..482 | 1..482 | 2510 | 100 | Plus |
