BS29181.complete Sequence
1539 bp assembled on 2012-06-11
GenBank Submission: KX804142
> BS29181.complete
GAAGTTATCAGTCGACATGAATCAAACGCAAGTAAATAATTTCCTCAAGT
GCTTCCTGCAAATCGATGAGCCGTCCAACCGTTGGACATCACGTCACGAC
GGGGAGGATCTCGATGATAACGACCATGATCATGATCATGACGACGACAA
CGACGACGACGAGAGTGGCGTTCTGGTTGCCAAGGTCACAGCCATGGTGG
TGCTATTTTGCGCCAGCGCGATCTGCGGGTCCATTCCCTTCTTGCTTAAC
CGTTGCTATCGCTGGACGGAAAACCAGACGAACGCACGATCCGCCATTGT
GGTCAAATGCCTGCTGTACTTTGGAGGCGGCGTCCTGCTAGCCACCACCT
TTCTCCATCTCTTGCCCGAAGTTCAGGAGGTCGTCGAAGAGCTGCAGGAG
TGCGGCATCATCGGAGAGCTCACTTTTCCGCTGGCCGAGCTTCTCATGTG
CTGTGGCTTCTTCCTCATGTACTTCATCGAGGAGGCCATGCACACGTATG
TCCATCATCATCAGAAGGATGAGGCTGGCGCCGCTTTCGAGCGGGGTCAC
AGCATCCGAAACAGCCACCTGCTGAAACCCACCGAAGGCAACGCTACCAC
ACCCACAGCCCCACCGGCGCCATTGGCTGGCACCGCTGAACTTGGAACAC
TATCGGTGCAGAATCTCCTGCAAAACGATCTGGAGCAGCAAAAGTTTGCT
ACCAAGCCACAGCAACAAGCTAATGGACACGGACACAGCCACGGGCATGG
ACATGGACATAGCCATCTACCAGTAATCGCAGACGATGCCGATGCGGGGG
ACATGTTGGCTTCATCTCTGCGCGGACTCTTCATCGTTTCCGCTCTGTCG
CTGCACGAACTCTTTGAGGGCATGGCCATTGGCCTAGAGAGCTCCGCCAG
TTCGGTGTGGTTTATGTTCGGTGCCGTTTCCGCACACAAATTGGTCCTGG
CCTTCTGCGTGGGCGTCGAGCTGATCGTGGCCAGGACCCGGATGTTACTG
GCCGTTCTCTATGTGTTGACCTTTGCGGTGGTTAGCCCTCTGGGCATCGG
AATCGGGATTTTGATAAATCACGGCGAAGAGACATCCGGACCCAGTCTGG
TCTCCGCCATTCTGCAAGGATTCGCCTGCGGCACGCTCATATACGTGGTG
TTCTTTGAGATACTCTCGAAAAATCGATCCGGTCTGCGCGCCTATTTGGC
CCTCTTCGTCGGCTTCCTTGTCATGTTTGGCCTGCAGCAGTTGACTTCCA
TTGGCGGACATGGTCATAGCCACAGCCACAGCAGTTGCTCCACGTCGGAA
CACACACACAACCACCAAGAGACTGAGACTGAGACCAGGTCAGCATCGGG
CCACACCCATGGCCACCAGCACGACCATGATCATCCACATCACCACAACC
ACGCTGAGGAGCTGGCCACGGTTCACAACTATGAACAGCAGCTGCAGCTC
TTGCGGCAGGTGACCCAAAAACTGCTTGAAGCCCACCCCAAGAAGGACGC
CTAGAAGCTTTCTAGACCATTCGTGTGGGGCGCAAAGGG
BS29181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip89B-RA | 1488 | CG6898-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| Zip42C.1-RA | 1059 | CG9428-PA | 615..737 | 841..963 | 255 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip89B-RA | 2011 | CG6898-RA | 412..1902 | 15..1505 | 7455 | 100 | Plus |
| Zip42C.1-RA | 1290 | CG9428-RA | 646..768 | 841..963 | 255 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16306169..16307398 | 15..1244 | 6150 | 100 | Plus |
| 3R | 32079331 | 3R | 16308331..16308591 | 1245..1505 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6716940..6717062 | 963..841 | 255 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:33:55 has no hits.
BS29181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:55 Download gff for
BS29181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip3-RA | 409..1899 | 17..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:03 Download gff for
BS29181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip3-RA | 414..1904 | 17..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:47 Download gff for
BS29181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip89B-RA | 414..1904 | 17..1510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:47 Download gff for
BS29181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16308331..16308593 | 1245..1510 | 98 | | Plus |
| 3R | 16306171..16307398 | 17..1244 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:03 Download gff for
BS29181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12131893..12133120 | 17..1244 | 100 | -> | Plus |
| arm_3R | 12134053..12134315 | 1245..1510 | 98 | | Plus |
BS29181.pep Sequence
Translation from 16 to 1503
> BS29181.pep
MNQTQVNNFLKCFLQIDEPSNRWTSRHDGEDLDDNDHDHDHDDDNDDDES
GVLVAKVTAMVVLFCASAICGSIPFLLNRCYRWTENQTNARSAIVVKCLL
YFGGGVLLATTFLHLLPEVQEVVEELQECGIIGELTFPLAELLMCCGFFL
MYFIEEAMHTYVHHHQKDEAGAAFERGHSIRNSHLLKPTEGNATTPTAPP
APLAGTAELGTLSVQNLLQNDLEQQKFATKPQQQANGHGHSHGHGHGHSH
LPVIADDADAGDMLASSLRGLFIVSALSLHELFEGMAIGLESSASSVWFM
FGAVSAHKLVLAFCVGVELIVARTRMLLAVLYVLTFAVVSPLGIGIGILI
NHGEETSGPSLVSAILQGFACGTLIYVVFFEILSKNRSGLRAYLALFVGF
LVMFGLQQLTSIGGHGHSHSHSSCSTSEHTHNHQETETETRSASGHTHGH
QHDHDHPHHHNHAEELATVHNYEQQLQLLRQVTQKLLEAHPKKDA*
BS29181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip89B-PA | 495 | CG6898-PA | 1..495 | 1..495 | 2619 | 100 | Plus |
| Zip42C.1-PA | 352 | CG9428-PA | 10..340 | 42..410 | 901 | 51.3 | Plus |
| Zip42C.2-PB | 310 | CG9430-PB | 6..309 | 52..424 | 551 | 37.1 | Plus |
| Zip88E-PB | 366 | CG4334-PB | 28..355 | 56..403 | 354 | 29.8 | Plus |
