BS29182.complete Sequence
1025 bp assembled on 2012-04-25
GenBank Submission: KX804250
> BS29182.complete
GAAGTTATCAGTCGACATGGGCGACTTCGATCTGAATGTGGACAGCTTGA
TACAGCGGCTGCTGGAGATGCGCAGCTGCCGAACGGGCAAACAGGTCCAG
ATGACGGAGGCGGAGGTGCGTGGCCTCTGTCTCAAGTCGCGCGAGATCTT
CTTGCAACAGCCCATCCTGCTGGAACTGGAGGCACCGCTGATCATCTGCG
GCGACATCCACGGCCAGTACACAGACCTGTTGCGCCTGTTCGAGTACGGC
GGATTCCCTCCGGCTGCCAACTACTTGTTCCTCGGCGACTACGTCGATCG
GGGCAAGCAGTCCCTGGAGACCATCTGTCTGCTGCTGGCCTACAAGATCA
AATATCCGGAGAACTTCTTCTTGTTGCGCGGCAACCACGAGTGCGCCAGT
ATTAATAGGATTTACGGCTTCTACGATGAGTGCAAGCGCCGATACAATGT
CAAACTGTGGAAGACTTTCACAGATTGCTTCAACTGTCTGCCGGTAGCCG
CCATTATTGACGAAAAGATCTTCTGCTGCCACGGCGGCCTCAGTCCCGAT
CTTCAGGGCATGGAGCAGATCCGTCGCCTAATGCGACCCACAGATGTGCC
GGATACCGGGTTACTGTGCGATCTTCTGTGGAGTGATCCCGACAAGGATG
TTCAGGGTTGGGGCGAGAATGATCGCGGTGTGAGCTTCACCTTCGGTGTG
GATGTGGTCTCCAAGTTTTTGAACCGCCACGAGCTGGACTTGATCTGCCG
TGCACATCAGGTTGTGGAGGATGGCTATGAGTTCTTTGCGCGTCGGCAAC
TGGTCACGTTGTTCTCGGCGCCCAATTACTGTGGAGAGTTCGACAATGCC
GGCGGAATGATGACCGTGGACGACACGCTGATGTGCTCATTCCAGATCCT
GAAACCATCCGAGAAGAAGGCCAAGTATCTGTACAGCGGAATGAACTCGT
CGCGACCCACAACACCGCAGCGCAGCGCCCCAATGCTTGCGACCAACAAG
AAGAAATAAAAGCTTTCTAGACCAT
BS29182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flw-RC | 993 | CG2096-PC | 1..993 | 17..1009 | 4965 | 100 | Plus |
| flw-RB | 993 | CG2096-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
| flw-RA | 1386 | CG2096-PA | 446..1386 | 69..1009 | 4705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flw-RC | 3883 | CG2096-RC | 553..1545 | 17..1009 | 4965 | 100 | Plus |
| flw-RB | 2131 | CG2096-RB | 553..1545 | 17..1009 | 4965 | 100 | Plus |
| flw-RA | 2524 | CG2096-RA | 998..1938 | 69..1009 | 4705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10406353..10406701 | 69..417 | 1745 | 100 | Plus |
| X | 23542271 | X | 10406761..10407107 | 416..762 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 12424792..12425574 | 916..134 | 1725 | 81.4 | Minus |
| X | 23542271 | X | 15359441..15360262 | 916..95 | 1395 | 78 | Minus |
| 3R | 32079331 | 3R | 24518898..24519192 | 123..417 | 755 | 83.7 | Plus |
| X | 23542271 | X | 10407164..10407300 | 759..895 | 685 | 100 | Plus |
| X | 23542271 | X | 10407363..10407479 | 893..1009 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 24519597..24519868 | 419..690 | 535 | 79.8 | Plus |
| 2R | 25286936 | 2R | 17955968..17956347 | 546..167 | 415 | 73.9 | Minus |
| Y | 3667352 | Y | 3540059..3540414 | 549..194 | 280 | 71.9 | Minus |
| 2R | 25286936 | 2R | 21881871..21882040 | 552..383 | 265 | 77.1 | Minus |
| X | 23542271 | X | 10386512..10386563 | 17..68 | 260 | 100 | Plus |
| Y | 3667352 | Y | 3539692..3539862 | 916..746 | 255 | 76.6 | Minus |
| 3R | 32079331 | 3R | 24519973..24520082 | 737..846 | 235 | 80.9 | Plus |
| 2L | 23513712 | 2L | 3110521..3110621 | 749..849 | 205 | 80.2 | Plus |
| 2R | 25286936 | 2R | 17955651..17955759 | 863..755 | 200 | 78.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:32:12 has no hits.
BS29182.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:00 Download gff for
BS29182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RB | 580..1563 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:35 Download gff for
BS29182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RB | 553..1536 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:14 Download gff for
BS29182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RB | 553..1536 | 17..1000 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:14 Download gff for
BS29182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10406762..10407105 | 417..760 | 100 | -> | Plus |
| X | 10407166..10407300 | 761..895 | 100 | -> | Plus |
| X | 10407366..10407470 | 896..1000 | 100 | | Plus |
| X | 10386512..10386563 | 17..68 | 100 | -> | Plus |
| X | 10406353..10406700 | 69..416 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:35 Download gff for
BS29182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10280545..10280596 | 17..68 | 100 | -> | Plus |
| arm_X | 10300386..10300733 | 69..416 | 100 | -> | Plus |
| arm_X | 10300795..10301138 | 417..760 | 100 | -> | Plus |
| arm_X | 10301199..10301333 | 761..895 | 100 | -> | Plus |
| arm_X | 10301399..10301503 | 896..1000 | 100 | | Plus |
BS29182.pep Sequence
Translation from 16 to 1008
> BS29182.pep
MGDFDLNVDSLIQRLLEMRSCRTGKQVQMTEAEVRGLCLKSREIFLQQPI
LLELEAPLIICGDIHGQYTDLLRLFEYGGFPPAANYLFLGDYVDRGKQSL
ETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNVKLWKT
FTDCFNCLPVAAIIDEKIFCCHGGLSPDLQGMEQIRRLMRPTDVPDTGLL
CDLLWSDPDKDVQGWGENDRGVSFTFGVDVVSKFLNRHELDLICRAHQVV
EDGYEFFARRQLVTLFSAPNYCGEFDNAGGMMTVDDTLMCSFQILKPSEK
KAKYLYSGMNSSRPTTPQRSAPMLATNKKK*
BS29182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flw-PC | 330 | CG2096-PC | 1..330 | 1..330 | 1772 | 100 | Plus |
| flw-PB | 330 | CG2096-PB | 1..330 | 1..330 | 1772 | 100 | Plus |
| flw-PA | 461 | CG2096-PA | 149..461 | 18..330 | 1684 | 99.7 | Plus |
| Pp1alpha-96A-PB | 327 | CG6593-PB | 5..327 | 6..330 | 1451 | 82.2 | Plus |
| Pp1alpha-96A-PA | 327 | CG6593-PA | 5..327 | 6..330 | 1451 | 82.2 | Plus |
