BS29185.complete Sequence
2012 bp assembled on 2012-06-11
GenBank Submission: KX802634
> BS29185.complete
GAAGTTATCAGTCGACATGCATTATTCCAATTTGTTTACCCAGACAACAA
GCAAACGCACAATGACAACCACTGGACTTCGACCACTGCTGAGCCTTCTG
TTCCTTGGATTGGGTGTGATACTCCTCTGTGATGTCAGCTCCTCGATTGC
CATAGCTCCGTCCACATTTGGCACGGCAATAGCACGTGCTGGGAAGATAT
CCAACCAGCTTAAGGAGACGACGGCATGGAAGACCCTGACATCGCATCCG
AACTCGCTTGTCCAACTGTTGCCATCGAGGGCCATGCGAGTGGTCCAGGA
GGTGGTAAGATCTCTGCGGAAAGAGCGTGAGATTGTGGCCACTACCTCGT
TGGGAAAAGTCAGGGGTCGCTATCAGAAGTATCGATCCGGAGAGCGAGGA
GGCTACTATAGTTTCAAAGGAATGCGATATGGAGCTCCGCCTACAGGAGC
AAGAAGATTCCGTGCTGCGGAGCCGGAGAAGCCGTGGTCTGGAATCCGTG
ATGCTTCTCGGGAAGGTCAGAGCTGTCCGCATAAGAACATGATCCTGGAC
ACTTTCAAGGGAGACGAGGATTGCCTGTTCGTCAATGTGTTCACAACCCA
AATGCCCAAGGATGATGAGTCTGCAGAGCAGCCAAAGCTTCCTGTTATGG
TTTGGCTGCATGGAGGAGGTTTCTCCTTTGGCTCCGGCAACTCTTTCCTC
TACGGACCGGACTATCTAGTGGCTGAGGATATTGTCTTGGTCACACTGAA
CTACCGACTAGGTCCACTGGGTTTTCTTACCGCAGGACCTGACGCTCCAG
GTAACCAGGGTCTCAAGGATCAGGTACTGGCACTAAAGTGGGTGCGGGAT
AACATAGCCGCATTTGGTGGAGATCCCAATCAGGTTACCATTTTCGGAGA
GTCAGCTGGAGCTTCGTCCGTCCAGTTGCTCCTCCTGTCCTCCCAGGCCA
AGGGACTTTTCCACCGAGCGATTTCCCAAAGTGGATCGGCCCTAAATCCA
TGGTCCATGTCCGCCAGTTCGAGCCAGAGAGCTGCTCGGCTGGCAGCCAA
CTTGGGTTACGTGGGGGCCAATAAAACAGAGGATATCCTCGACTTTCTTA
GAAGGGTTCCAGCCATGAAATTGGTTGAAGCCGCGCCCACAACAATCACG
GCGGAGGATCAGCGGAATAACATTGGTTTGCCATTTGTGCCCGTGGTGGA
GGGATATTGGAATCAGGACTCTCAGGAGGAACAGTTCTACGAGGAGCCAT
TCCTTACTCAGCACCCTAGCGACATGTATCATTCGCAGAATTTTAACAGC
GATGTGGCCTATATGACGGGTTACAATACACACGAGGCCATGCTGTTCAT
AAGAAGACTTCGCAAGAATCCCCAGTTGCTGAGCATCATTGAGAACGATT
TTGGCCGCCTGGTTCCGCAAGATTTGAATGTGACTGAATCTCATGATAGG
GTGACCCGCGAGATAAGATCCTTCTACTTGGGAAGCAAGCATGTGGGCAT
TGAATCAGTGGACGAGATGATTGCGCTCCTCACGGATCTCATGTTCCTTC
AGGGCATCCGTCGCACAGCCCGAAATCATGCCAAGTTTGGAAATGCACCT
GTCTACATGTACCGCTTCTCCTTCGACGGATCTTTGGGGCTCTACAAACG
GATGCTGGGTATTCCCCGACCTGGTGTTTGCCATGGCGATGAGCTGGGTT
ATCTGTTCAAGTTCGGTTTCTTCAATTTGAGCTTGGATCCCAAGTCGATG
GAGGTACAGGTCAAGAATCGAATGGTGCGCATGTGGACGAATTTCGCGAA
ATATGGCTCTCCTACGCCTGATTCCGAGGATCCTATGCTGACCACCAAGT
GGGCACCAATCGATCCCACCAATGTGATGAACAGTCTCAACTATATGGAT
ATCTCAGCCAATCTGGCGATGAAAACCAATCCCGAGCCGGAGCGTCAGAG
ATTCTGGGATGAGATGTATCAGCATTACAATGGGGCTGCCATGTAAAAGC
TTTCTAGACCAT
BS29185.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RC | 1980 | CG10175-PC | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| CG10175-RE | 1935 | CG10175-PE | 1..1935 | 62..1996 | 9675 | 100 | Plus |
| CG10175-RA | 1935 | CG10175-PA | 1..1935 | 62..1996 | 9675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RC | 2463 | CG10175-RC | 112..2093 | 17..1998 | 9910 | 100 | Plus |
| CG10175-RE | 2809 | CG10175-RE | 45..2000 | 43..1998 | 9780 | 100 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 45..2000 | 43..1998 | 9780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523898..23524800 | 1356..454 | 4515 | 100 | Minus |
| 3R | 32079331 | 3R | 23523322..23523603 | 1806..1525 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 23528675..23528873 | 215..17 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 23523073..23523265 | 1998..1806 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 23523668..23523837 | 1525..1356 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 23524853..23524990 | 456..319 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 23525496..23525602 | 319..213 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:33:59 has no hits.
BS29185.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:56 Download gff for
BS29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 112..2089 | 17..1994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:05 Download gff for
BS29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 112..2089 | 17..1994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:49 Download gff for
BS29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 112..2089 | 17..1994 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:49 Download gff for
BS29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523077..23523264 | 1807..1994 | 100 | <- | Minus |
| 3R | 23523322..23523602 | 1526..1806 | 100 | <- | Minus |
| 3R | 23523668..23523837 | 1356..1525 | 100 | <- | Minus |
| 3R | 23523899..23524797 | 457..1355 | 100 | <- | Minus |
| 3R | 23524853..23524989 | 320..456 | 100 | <- | Minus |
| 3R | 23525496..23525600 | 215..319 | 100 | <- | Minus |
| 3R | 23528676..23528873 | 17..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:05 Download gff for
BS29185.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19348799..19348986 | 1807..1994 | 100 | <- | Minus |
| arm_3R | 19349044..19349324 | 1526..1806 | 100 | <- | Minus |
| arm_3R | 19349390..19349559 | 1356..1525 | 100 | <- | Minus |
| arm_3R | 19349621..19350519 | 457..1355 | 100 | <- | Minus |
| arm_3R | 19350575..19350711 | 320..456 | 100 | <- | Minus |
| arm_3R | 19351218..19351322 | 215..319 | 100 | <- | Minus |
| arm_3R | 19354398..19354595 | 17..214 | 100 | | Minus |
BS29185.pep Sequence
Translation from 16 to 1995
> BS29185.pep
MHYSNLFTQTTSKRTMTTTGLRPLLSLLFLGLGVILLCDVSSSIAIAPST
FGTAIARAGKISNQLKETTAWKTLTSHPNSLVQLLPSRAMRVVQEVVRSL
RKEREIVATTSLGKVRGRYQKYRSGERGGYYSFKGMRYGAPPTGARRFRA
AEPEKPWSGIRDASREGQSCPHKNMILDTFKGDEDCLFVNVFTTQMPKDD
ESAEQPKLPVMVWLHGGGFSFGSGNSFLYGPDYLVAEDIVLVTLNYRLGP
LGFLTAGPDAPGNQGLKDQVLALKWVRDNIAAFGGDPNQVTIFGESAGAS
SVQLLLLSSQAKGLFHRAISQSGSALNPWSMSASSSQRAARLAANLGYVG
ANKTEDILDFLRRVPAMKLVEAAPTTITAEDQRNNIGLPFVPVVEGYWNQ
DSQEEQFYEEPFLTQHPSDMYHSQNFNSDVAYMTGYNTHEAMLFIRRLRK
NPQLLSIIENDFGRLVPQDLNVTESHDRVTREIRSFYLGSKHVGIESVDE
MIALLTDLMFLQGIRRTARNHAKFGNAPVYMYRFSFDGSLGLYKRMLGIP
RPGVCHGDELGYLFKFGFFNLSLDPKSMEVQVKNRMVRMWTNFAKYGSPT
PDSEDPMLTTKWAPIDPTNVMNSLNYMDISANLAMKTNPEPERQRFWDEM
YQHYNGAAM*
BS29185.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PC | 659 | CG10175-PC | 1..659 | 1..659 | 3449 | 100 | Plus |
| CG10175-PE | 644 | CG10175-PE | 1..644 | 16..659 | 3370 | 100 | Plus |
| CG10175-PA | 644 | CG10175-PA | 1..644 | 16..659 | 3370 | 100 | Plus |
| CG10175-PD | 707 | CG10175-PD | 115..707 | 67..659 | 3126 | 100 | Plus |
| CG10175-PB | 524 | CG10175-PB | 1..524 | 136..659 | 2776 | 100 | Plus |
