BS29189.complete Sequence
2399 bp assembled on 2012-06-11
GenBank Submission: KX806149
> BS29189.complete
GAAGTTATCAGTCGACATGAATTCCGAGATTAATCAACGATTCCTGGCCC
GCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGAT
TCCCAGGGCATGAATGCAGCCGTGCGAGCCTGTGTCCGTATGGCCATCTA
TTTGGGCTGCAAGGTCTACTTCATTCGTGAAGGCTACCAGGGCATGGTGG
ATGGTGGCGACTGCATCCAGGAAGCCAACTGGGCCTCAGTCTCATCCATT
ATCCATCGTGGTGGCACCATCATTGGCTCCGCCCGTTGCCAGGACTTCCG
TGAGCGTCAGGGTCGCTTGAAAGCCGCTAACAACCTGATTCAGCGAGGAA
TCACCAATCTGGTGGTCATTGGAGGCGATGGCTCCCTCACGGGCGCCAAT
CTGTTCCGTCAGGAGTGGTCCAGCCTGTTGGACGAGCTGGTCAAGAACAA
GACCATTACCACCGAGCAGCAGGAGAAGTTCAATGTCCTGCACATCGTTG
GATTGGTTGGCTCCATCGACAACGATTTCTGTGGCACTGACATGACCATC
GGCACGGACACGGCACTACATCGCATCATCGAGGCAATCGATGCCATCTC
CAGTACAGCCTACTCCCATCAGCGCACCTTCATCATGGAGGTCATGGGTC
GTCATTGCGGCTATTTAGCTCTTGTGGGTGGACTGGCGTGCGAGGCGGAT
TTCATATTCATTCCCGAAATGCCGCCCAAGGTCGATTGGCCAGACAGGCT
CTGCTCTCAGCTGGCCCAGGAGCGATCTGCTGGCCAGCGTCTGAACATCG
TGATTGTGGCCGAGGGAGCCATGGATCGCGAGGGTCATCCCATCACAGCC
GAGGATGTAAAGAAGGTGATCGACGAGCGTCTGAAGCACGATGCCCGCAT
CACTGTCTTGGGTCACGTGCAGCGCGGTGGCAATCCCAGTGCCTTCGATC
GTATTTTGGCTTGCCGCATGGGAGCTGAGGCCACTTTGGCCCTGATGGAG
GCCACCAAGGACTCGGTGCCAGTGGTCATCTCTCTGGACGGCAACCAGGC
GGTTCGCGTGCCGCTGATGGAGTGCGTAGAGCGCACCCAGGCTGTGGCCA
AGGCCATGGCGGAGAAACGCTGGGCGGATGCCGTCAAGCTGCGCGGACGC
TCCTTCGAGCGGAATCTGGAGACCTACAAGATGCTGACGCGCTTGAAGCC
GCCCAAGGAGAACTTCGACGCCGATGGCAAGGGAATCGAAGGATACCGCC
TAGCTGTGATGCATATTGGTGCTCCGGCTTGCGGTATGAATGCCGCTGTG
CGCAGCTTCGTGCGCAATGCCATCTACCGCGGTGATGTGGTTTATGGAAT
CAACGACGGTGTCGAGGGTCTGATTGCCGGAAATGTCCGCGAGCTGGGCT
GGTCGGATGTCTCAGGATGGGTTGGTCAGGGTGGCGCCTACTTGGGTACC
AAACGCACACTGCCTGAGGGCAAGTTCAAGGAGATCGCCGCTCGTCTCAA
GGAGTTTAAGATCCAGGGTCTCCTGATCATTGGTGGCTTTGAGAGTTACC
ATGCCGCCGGACAGATCGCCGATCAGCGGGACAACTACCCACAGTTCTGC
ATCCCCATTGTGGTTATTCCATCGACGATTTCGAACAATGTGCCCGGCAC
AGAATTTTCTCTGGGATGCGACACCGGTTTAAATGAGATTACGGAGATTT
GCGACCGTATCCGTCAGTCGGCACAGGGAACCAAGCGCCGAGTGTTCGTC
ATTGAGACGATGGGTGGCTACTGTGGCTATTTGGCCACCTTGGCCGGCTT
GGCCGGCGGAGCTGATGCCGCCTACATCTACGAGGAGAAGTTCTCCATCA
AAGACCTGCAGCAGGATGTCTACCACATGGCCTCCAAGATGGCCGAGGGC
GTCTCCCGCGGTCTAATCCTGCGAAACGAGAAGGCTAGCGAGAACTACAG
CACGGACTTCATTTACCGCCTGTACTCGGAGGAGGGCAAGGGCCTCTTCA
CCTGCCGTATGAACATCCTGGGTCACATGCAGCAGGGCGGCTCACCCACT
CCCTTCGACCGCAACATGGGCACCAAAATGGCCGCCAAGTGTGTCGACTG
GCTGGCCGCCCAGATCAAGGCGAACATCGACGCCAACGGCGTAGTCAACT
GCAAGTCCCCGGACACCGCCACGCTGCTGGGAATCGTGTCGCGGCAGTAC
CGCTTCTCACCGCTGGTCGACCTCATTGCAGAGACGAACTTCGATCAACG
CATCCCGAAGAAGCAGTGGTGGCTGCGCCTGCGTCCCCTGCTGCGCATCC
TGGCCAAGCACGATTCCGCCTACGAGGAGGAGGGTATGTACATCACCGTC
GAGGAGGAGTGTGACACTGACGCCGTCGCCTAAAAGCTTTCTAGACCAT
BS29189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RB | 2367 | CG4001-PB | 1..2367 | 17..2383 | 11820 | 100 | Plus |
| Pfk-RA | 2853 | CG4001-PA | 532..2853 | 62..2383 | 11595 | 100 | Plus |
| Pfk-RC | 2367 | CG4001-PC | 1..2367 | 17..2383 | 11145 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RB | 3508 | CG4001-RB | 560..2926 | 17..2383 | 11820 | 100 | Plus |
| Pfk-RA | 3217 | CG4001-RA | 634..2955 | 62..2383 | 11595 | 100 | Plus |
| Pfk-RC | 3188 | CG4001-RC | 560..2926 | 17..2383 | 11145 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10115814..10116657 | 1401..2244 | 4220 | 100 | Plus |
| 2R | 25286936 | 2R | 10115314..10115759 | 958..1403 | 2230 | 100 | Plus |
| 2R | 25286936 | 2R | 10112612..10112960 | 159..507 | 1745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114914..10115106 | 767..959 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 10113015..10113170 | 505..660 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 10111429..10111577 | 17..165 | 730 | 99.3 | Plus |
| 2R | 25286936 | 2R | 10116737..10116875 | 2245..2383 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 10113537..10113652 | 655..770 | 565 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:34:16 has no hits.
BS29189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:58 Download gff for
BS29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 533..2897 | 17..2381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:11 Download gff for
BS29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 560..2924 | 17..2381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:55 Download gff for
BS29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 560..2924 | 17..2381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:55 Download gff for
BS29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10116737..10116873 | 2245..2381 | 100 | | Plus |
| 2R | 10111429..10111575 | 17..163 | 99 | -> | Plus |
| 2R | 10112617..10112958 | 164..505 | 100 | -> | Plus |
| 2R | 10113016..10113170 | 506..660 | 100 | -> | Plus |
| 2R | 10113543..10113651 | 661..769 | 100 | -> | Plus |
| 2R | 10114917..10115105 | 770..958 | 100 | -> | Plus |
| 2R | 10115315..10115757 | 959..1401 | 100 | -> | Plus |
| 2R | 10115815..10116657 | 1402..2244 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:11 Download gff for
BS29189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6004242..6004378 | 2245..2381 | 100 | | Plus |
| arm_2R | 5998934..5999080 | 17..163 | 99 | -> | Plus |
| arm_2R | 6000122..6000463 | 164..505 | 100 | -> | Plus |
| arm_2R | 6000521..6000675 | 506..660 | 100 | -> | Plus |
| arm_2R | 6001048..6001156 | 661..769 | 100 | -> | Plus |
| arm_2R | 6002422..6002610 | 770..958 | 100 | -> | Plus |
| arm_2R | 6002820..6003262 | 959..1401 | 100 | -> | Plus |
| arm_2R | 6003320..6004162 | 1402..2244 | 100 | -> | Plus |
BS29189.pep Sequence
Translation from 16 to 2382
> BS29189.pep
MNSEINQRFLARGSQKDKGLAVFTSGGDSQGMNAAVRACVRMAIYLGCKV
YFIREGYQGMVDGGDCIQEANWASVSSIIHRGGTIIGSARCQDFRERQGR
LKAANNLIQRGITNLVVIGGDGSLTGANLFRQEWSSLLDELVKNKTITTE
QQEKFNVLHIVGLVGSIDNDFCGTDMTIGTDTALHRIIEAIDAISSTAYS
HQRTFIMEVMGRHCGYLALVGGLACEADFIFIPEMPPKVDWPDRLCSQLA
QERSAGQRLNIVIVAEGAMDREGHPITAEDVKKVIDERLKHDARITVLGH
VQRGGNPSAFDRILACRMGAEATLALMEATKDSVPVVISLDGNQAVRVPL
MECVERTQAVAKAMAEKRWADAVKLRGRSFERNLETYKMLTRLKPPKENF
DADGKGIEGYRLAVMHIGAPACGMNAAVRSFVRNAIYRGDVVYGINDGVE
GLIAGNVRELGWSDVSGWVGQGGAYLGTKRTLPEGKFKEIAARLKEFKIQ
GLLIIGGFESYHAAGQIADQRDNYPQFCIPIVVIPSTISNNVPGTEFSLG
CDTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLATLAGLAGGAD
AAYIYEEKFSIKDLQQDVYHMASKMAEGVSRGLILRNEKASENYSTDFIY
RLYSEEGKGLFTCRMNILGHMQQGGSPTPFDRNMGTKMAAKCVDWLAAQI
KANIDANGVVNCKSPDTATLLGIVSRQYRFSPLVDLIAETNFDQRIPKKQ
WWLRLRPLLRILAKHDSAYEEEGMYITVEEECDTDAVA*
BS29189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-PB | 788 | CG4001-PB | 1..788 | 1..788 | 4095 | 100 | Plus |
| Pfk-PA | 950 | CG4001-PA | 178..950 | 16..788 | 4021 | 100 | Plus |
| Pfk-PC | 788 | CG4001-PC | 1..788 | 1..788 | 4003 | 97.8 | Plus |
| Pfk-PD | 950 | CG4001-PD | 178..950 | 16..788 | 3947 | 97.9 | Plus |
| Pfk-PE | 922 | CG4001-PE | 184..922 | 50..788 | 3771 | 97.8 | Plus |
