BS29190.complete Sequence
1964 bp assembled on 2012-05-15
GenBank Submission: KX800554
> BS29190.complete
GAAGTTATCAGTCGACATGGCCTCCACCAGCAATCTGCTGGACGTGGTGC
GCCACTACCAGCGCAGCATTGAGAAGCACGGCGAGGACGAACAACGGCTG
CTGCACTGCATCACCAAGCTGTTCAACCTGCCGATCAAATTCGAGCACCT
GCAGGAAACGGGAATTGGCAAGACGGTGAATGCCCTGCGCAAGATCAGCG
GGGAAGTTGGCGTGGCGGCCAAGACGCTGGTAACCAAGTGGAAGGCAATG
GTGGCGAAGGAGGACCCTTCGATCGCATCTACGCCTACAGCCATACATAA
CGAAGAGGACTCGGGCAAGACCAAGTCCAGCGACGAGGATCCCGACCAGG
AGAACAAGGGCGGCAACTCATCCAGCGGCGAGGACTTGAACACCAGCAAG
CACAAGTCAAAGCATGCCAAGAGCACCAAGCATGAGCGTAGCAGCAGCAG
CCGATCTCACTCCAAGAGTAGGTCTGACTCGGATAAGAAGCACAAGAGCT
CTCGCCACGATAAATCCAAGGATAGAGATAAAGATCGGGAGGGTCAGAAG
GAAGCTAAGGAGCACAAAGAAAAGAAGTCAAATGGCGAGCACAAGTCAAA
GGATTCCAGCAAATCCAGCAGCAGTCACAAGAGCAGCAAATCCGAGAGCC
ACAAGAGCGAACACACCAAAAGCAAGCACGAAAAGGACAAAACTTCTCAC
AGTGAATTAAAGGAAGTCAAAGACAAGTCGAGCAAACACAAATCATCGTC
CTCCAAGTCATCAAAGCGCTCCCATAGTCCCCCACGCCACGAGGAGGAGT
CCCAAAAAGCAAAGATACCAAAAGTTAAATCGAAATCTGAGGAAGATTCC
GCTGATGGTTTTGACTCCAGCATGGGCGCAAATTTTGACGATGTTCTTGG
TCTGCTAAACATACCCATAAGTAGCAAGAAGAGCAGCAGCAACAGCAAGA
GCAAGTTTGTCGCCAAGCCAACTGCAGCCCCTTCCTCGTCAGCTCTATCA
GCACCTACGACTGCTGGGTCATCTAAAGAGGCACTCTCAACTAGCAGTCG
ACCGACCTCCAAAAAACCCGAACTGTTGGCATCCACAGCTAAGCTGGAGC
CCTTGGATCCAAACATTGCACTAGAACTTCCCACCATATCCAATAACTAC
AAGCCCATGCCATTAAATCAGACAGTTATGGACGTCGTCTTTAACCAGGG
TGGCTCACACAAGGCGCAAGCATCACGATACTTTAATGAGTCAGAAGCTC
TAGCGCAGGGCATCTCTTCCAAAACTATGCGCACCAAGATCTATTCGGGT
GTGAGAACTGGTCAAATCCTGCAGGTCCCTTCCCTTTTTGATCTCTGCAC
CCGCGTGCTGCAAAAGAATATTGATGCATTGGAGTATACGGGTGGCGTTC
CGTTTGAGGTCCTACGTCCCGTTTTGGAGCGAGCTACCCCCCAGCAGCTG
CTTAACTTTGAGGAGTACAATCCTTATTTAATGGATGACAGTGATGTCCT
ATGGCAACAGCATGTCCAACGTCACTGTCGCAGTCAGCGGCGTGAAGAGA
TGGAAACGTGGCGCGAAATGTTTTTGCGCTGCCAAGAGGAAAAGGATCGC
AAACTTAGCATTCTGGCCGAGAGCATCAAGGCATCGCAAAAGATAAGCGA
GGCGCCTGTGCGCAAGACGCAATTGGCCTTTGTGGACTCAATGGTGAAGC
CGCCGCGTAGTGTGCAGCGCAAGCAAGAGCAATATGGCACCAAGGGCAAG
CTAATTGCCACTCCAGCCGCCCGAGTGGCCGCCTTGTCCAGCGTGACTCC
AAATGCAGCCAAGGTGGGCGATGCCCGACTACGTGTGCTGGCCGCTGCCA
GGGACACGGCCCAAGTGGGGGCTGGACCAGCGCGATCGAAGAAGGCACCT
CTAATGGCGAAGACCTTGCAGTTTATGCGCGGACGTCTCAAACGATAGAA
GCTTTCTAGACCAT
BS29190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloA-RA | 1932 | CG6755-PA | 1..1932 | 17..1948 | 9660 | 100 | Plus |
| EloA-RB | 1701 | CG6755-PB | 1..1701 | 248..1948 | 8505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloA-RA | 2869 | CG6755-RA | 315..2247 | 17..1949 | 9665 | 100 | Plus |
| EloA-RB | 2697 | CG6755-RB | 224..2075 | 98..1949 | 9260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23252248..23252837 | 97..686 | 2950 | 100 | Plus |
| 3R | 32079331 | 3R | 23252890..23253269 | 684..1063 | 1900 | 100 | Plus |
| 3R | 32079331 | 3R | 23254017..23254310 | 1576..1869 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 23253325..23253542 | 1064..1281 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 23253752..23253952 | 1376..1576 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 23253600..23253695 | 1281..1376 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 23254368..23254449 | 1868..1949 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 23251877..23251957 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2544 | 908..1068 | 169 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6850 | 904..1047 | 161 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2448 | 916..1011 | 160 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6970 | 908..1065 | 158 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2554 | 899..1166 | 152 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6866 | 908..1048 | 141 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2911 | 916..1033 | 139 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6904 | 908..1043 | 137 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6878 | 908..1005 | 136 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2712 | 918..1052 | 130 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6798 | 908..953 | 122 | 73.9 | Plus |
BS29190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:59 Download gff for
BS29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 334..2265 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:41 Download gff for
BS29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 315..2246 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:39 Download gff for
BS29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 315..2246 | 17..1948 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:39 Download gff for
BS29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23251877..23251957 | 17..97 | 100 | -> | Plus |
| 3R | 23252249..23252836 | 98..685 | 100 | -> | Plus |
| 3R | 23252892..23253269 | 686..1063 | 100 | -> | Plus |
| 3R | 23253325..23253542 | 1064..1281 | 100 | -> | Plus |
| 3R | 23253601..23253695 | 1282..1376 | 100 | -> | Plus |
| 3R | 23253753..23253952 | 1377..1576 | 100 | -> | Plus |
| 3R | 23254018..23254309 | 1577..1868 | 100 | -> | Plus |
| 3R | 23254369..23254448 | 1869..1948 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:41 Download gff for
BS29190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19077599..19077679 | 17..97 | 100 | -> | Plus |
| arm_3R | 19077971..19078558 | 98..685 | 100 | -> | Plus |
| arm_3R | 19078614..19078991 | 686..1063 | 100 | -> | Plus |
| arm_3R | 19079047..19079264 | 1064..1281 | 100 | -> | Plus |
| arm_3R | 19079323..19079417 | 1282..1376 | 100 | -> | Plus |
| arm_3R | 19079475..19079674 | 1377..1576 | 100 | -> | Plus |
| arm_3R | 19079740..19080031 | 1577..1868 | 100 | -> | Plus |
| arm_3R | 19080091..19080170 | 1869..1948 | 100 | | Plus |
BS29190.pep Sequence
Translation from 16 to 1947
> BS29190.pep
MASTSNLLDVVRHYQRSIEKHGEDEQRLLHCITKLFNLPIKFEHLQETGI
GKTVNALRKISGEVGVAAKTLVTKWKAMVAKEDPSIASTPTAIHNEEDSG
KTKSSDEDPDQENKGGNSSSGEDLNTSKHKSKHAKSTKHERSSSSRSHSK
SRSDSDKKHKSSRHDKSKDRDKDREGQKEAKEHKEKKSNGEHKSKDSSKS
SSSHKSSKSESHKSEHTKSKHEKDKTSHSELKEVKDKSSKHKSSSSKSSK
RSHSPPRHEEESQKAKIPKVKSKSEEDSADGFDSSMGANFDDVLGLLNIP
ISSKKSSSNSKSKFVAKPTAAPSSSALSAPTTAGSSKEALSTSSRPTSKK
PELLASTAKLEPLDPNIALELPTISNNYKPMPLNQTVMDVVFNQGGSHKA
QASRYFNESEALAQGISSKTMRTKIYSGVRTGQILQVPSLFDLCTRVLQK
NIDALEYTGGVPFEVLRPVLERATPQQLLNFEEYNPYLMDDSDVLWQQHV
QRHCRSQRREEMETWREMFLRCQEEKDRKLSILAESIKASQKISEAPVRK
TQLAFVDSMVKPPRSVQRKQEQYGTKGKLIATPAARVAALSSVTPNAAKV
GDARLRVLAAARDTAQVGAGPARSKKAPLMAKTLQFMRGRLKR*
BS29190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloA-PA | 643 | CG6755-PA | 1..643 | 1..643 | 3250 | 100 | Plus |
| EloA-PB | 566 | CG6755-PB | 1..566 | 78..643 | 2856 | 100 | Plus |
| PNUTS-PA | 628 | CG33526-PA | 207..461 | 68..346 | 246 | 29.4 | Plus |
| PNUTS-PB | 628 | CG33526-PB | 207..461 | 68..346 | 246 | 29.4 | Plus |
| PNUTS-PE | 1135 | CG33526-PE | 207..461 | 68..346 | 246 | 29.4 | Plus |
| PNUTS-PA | 628 | CG33526-PA | 260..518 | 91..358 | 217 | 26.1 | Plus |
| PNUTS-PB | 628 | CG33526-PB | 260..518 | 91..358 | 217 | 26.1 | Plus |
